Hb_004060_010

Information

Type -
Description -
Location Contig4060: 287-4671
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004060_010 0.0 - - -
2 Hb_000352_150 0.1585968998 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
3 Hb_001980_020 0.1608602901 - - -
4 Hb_175445_010 0.1617875152 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
5 Hb_002875_090 0.1745466296 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_003636_090 0.1808427343 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
7 Hb_003756_010 0.1894748155 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
8 Hb_000997_260 0.1896064431 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
9 Hb_178345_010 0.1911603869 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
10 Hb_000928_230 0.1915778119 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007625_020 0.1968186269 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
12 Hb_003788_040 0.2026202387 - - -
13 Hb_001892_150 0.204794547 - - -
14 Hb_003327_060 0.2086537859 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
15 Hb_000175_040 0.2087561181 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
16 Hb_002078_430 0.2096111857 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
17 Hb_000680_150 0.2165826365 - - PREDICTED: protein STU1-like [Jatropha curcas]
18 Hb_003253_010 0.2184139694 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
19 Hb_007451_030 0.2202506089 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
20 Hb_000933_140 0.2207064295 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]

Gene co-expression network

sample Hb_004060_010 Hb_004060_010 Hb_000352_150 Hb_000352_150 Hb_004060_010--Hb_000352_150 Hb_001980_020 Hb_001980_020 Hb_004060_010--Hb_001980_020 Hb_175445_010 Hb_175445_010 Hb_004060_010--Hb_175445_010 Hb_002875_090 Hb_002875_090 Hb_004060_010--Hb_002875_090 Hb_003636_090 Hb_003636_090 Hb_004060_010--Hb_003636_090 Hb_003756_010 Hb_003756_010 Hb_004060_010--Hb_003756_010 Hb_000352_150--Hb_002875_090 Hb_000352_150--Hb_001980_020 Hb_170116_010 Hb_170116_010 Hb_000352_150--Hb_170116_010 Hb_000352_150--Hb_003636_090 Hb_001454_390 Hb_001454_390 Hb_000352_150--Hb_001454_390 Hb_003253_010 Hb_003253_010 Hb_000352_150--Hb_003253_010 Hb_003777_070 Hb_003777_070 Hb_001980_020--Hb_003777_070 Hb_001980_020--Hb_170116_010 Hb_001980_020--Hb_003253_010 Hb_001980_020--Hb_002875_090 Hb_007810_050 Hb_007810_050 Hb_001980_020--Hb_007810_050 Hb_175445_010--Hb_003756_010 Hb_175445_010--Hb_007810_050 Hb_175445_010--Hb_003253_010 Hb_175445_010--Hb_001980_020 Hb_010098_080 Hb_010098_080 Hb_175445_010--Hb_010098_080 Hb_002875_090--Hb_003636_090 Hb_001780_060 Hb_001780_060 Hb_002875_090--Hb_001780_060 Hb_002875_090--Hb_001454_390 Hb_002875_090--Hb_170116_010 Hb_003304_080 Hb_003304_080 Hb_002875_090--Hb_003304_080 Hb_004738_090 Hb_004738_090 Hb_003636_090--Hb_004738_090 Hb_000085_340 Hb_000085_340 Hb_003636_090--Hb_000085_340 Hb_002067_160 Hb_002067_160 Hb_003636_090--Hb_002067_160 Hb_000997_260 Hb_000997_260 Hb_003636_090--Hb_000997_260 Hb_000270_400 Hb_000270_400 Hb_003636_090--Hb_000270_400 Hb_010872_060 Hb_010872_060 Hb_003756_010--Hb_010872_060 Hb_012799_060 Hb_012799_060 Hb_003756_010--Hb_012799_060 Hb_001140_160 Hb_001140_160 Hb_003756_010--Hb_001140_160 Hb_000078_030 Hb_000078_030 Hb_003756_010--Hb_000078_030 Hb_000699_020 Hb_000699_020 Hb_003756_010--Hb_000699_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.68681 0 0.0396806 0 0.829273 1.62362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49018 1.57757 0.247178 0.0363449 0.183036

CAGE analysis