Hb_004060_020

Information

Type -
Description -
Location Contig4060: 26111-32602
Sequence    

Annotation

kegg
ID rcu:RCOM_1334340
description nucleic acid binding protein, putative
nr
ID XP_002523145.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID F4I6E6
description Primase homolog protein OS=Arabidopsis thaliana GN=At1g30660 PE=3 SV=1
trembl
ID B9SAY5
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1334340 PE=4 SV=1
Gene Ontology
ID GO:0003697
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40301: 26168-39893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004060_020 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_001971_010 0.08953069 - - F23N19.4 [Arabidopsis thaliana]
3 Hb_001575_070 0.0904440241 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]
4 Hb_163950_030 0.0926333106 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
5 Hb_005078_010 0.0968325298 - - Derlin-2, putative [Ricinus communis]
6 Hb_002235_250 0.1001439737 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
7 Hb_009694_010 0.1062848715 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001252_130 0.1069420132 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
9 Hb_029879_010 0.1075266929 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
10 Hb_005847_060 0.1078106499 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
11 Hb_001205_310 0.1085523879 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
12 Hb_004841_010 0.1095553002 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
13 Hb_004619_080 0.1098281169 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
14 Hb_000331_260 0.1118381225 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
15 Hb_006570_140 0.1125954337 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
16 Hb_000110_310 0.1134162058 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
17 Hb_022693_140 0.1136333408 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
18 Hb_004531_140 0.1147869614 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
19 Hb_006153_070 0.1148910624 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
20 Hb_000606_090 0.1152387278 - - Far upstream element-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004060_020 Hb_004060_020 Hb_001971_010 Hb_001971_010 Hb_004060_020--Hb_001971_010 Hb_001575_070 Hb_001575_070 Hb_004060_020--Hb_001575_070 Hb_163950_030 Hb_163950_030 Hb_004060_020--Hb_163950_030 Hb_005078_010 Hb_005078_010 Hb_004060_020--Hb_005078_010 Hb_002235_250 Hb_002235_250 Hb_004060_020--Hb_002235_250 Hb_009694_010 Hb_009694_010 Hb_004060_020--Hb_009694_010 Hb_001252_130 Hb_001252_130 Hb_001971_010--Hb_001252_130 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_001971_010--Hb_002235_250 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090 Hb_006478_020 Hb_006478_020 Hb_001971_010--Hb_006478_020 Hb_000172_290 Hb_000172_290 Hb_001971_010--Hb_000172_290 Hb_024847_010 Hb_024847_010 Hb_001575_070--Hb_024847_010 Hb_001575_070--Hb_001252_130 Hb_001575_070--Hb_009694_010 Hb_001205_310 Hb_001205_310 Hb_001575_070--Hb_001205_310 Hb_082821_010 Hb_082821_010 Hb_001575_070--Hb_082821_010 Hb_004837_030 Hb_004837_030 Hb_163950_030--Hb_004837_030 Hb_163950_030--Hb_009694_010 Hb_004841_010 Hb_004841_010 Hb_163950_030--Hb_004841_010 Hb_000494_040 Hb_000494_040 Hb_163950_030--Hb_000494_040 Hb_002184_150 Hb_002184_150 Hb_163950_030--Hb_002184_150 Hb_000606_090 Hb_000606_090 Hb_163950_030--Hb_000606_090 Hb_012194_050 Hb_012194_050 Hb_005078_010--Hb_012194_050 Hb_152202_010 Hb_152202_010 Hb_005078_010--Hb_152202_010 Hb_004994_380 Hb_004994_380 Hb_005078_010--Hb_004994_380 Hb_000193_270 Hb_000193_270 Hb_005078_010--Hb_000193_270 Hb_000074_080 Hb_000074_080 Hb_005078_010--Hb_000074_080 Hb_005496_140 Hb_005496_140 Hb_002235_250--Hb_005496_140 Hb_002235_250--Hb_000331_260 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_002235_250--Hb_000866_010 Hb_000375_350 Hb_000375_350 Hb_002235_250--Hb_000375_350 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_004096_090 Hb_004096_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.68479 0.62088 2.05852 1.97949 1.32765 3.54118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07536 2.55333 1.88064 1.36128 2.49939

CAGE analysis