Hb_004064_010

Information

Type -
Description -
Location Contig4064: 12391-53166
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04720g
description POPTRDRAFT_733116; hypothetical protein
nr
ID XP_011035592.1
description PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
swissprot
ID Q46888
description Uncharacterized oxidoreductase YgbJ OS=Escherichia coli (strain K12) GN=ygbJ PE=3 SV=1
trembl
ID B9IED7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04720g PE=4 SV=2
Gene Ontology
ID GO:0004616
description ketose-bisphosphate aldolase class-ii family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40307: 12873-14776 , PASA_asmbl_40308: 12636-19226 , PASA_asmbl_40309: 20070-45534 , PASA_asmbl_40310: 43708-45534 , PASA_asmbl_40311: 45547-53206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004064_010 0.0 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
2 Hb_003266_100 0.0620257892 - - Isomerase protein [Gossypium arboreum]
3 Hb_105602_010 0.1009359678 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
4 Hb_000621_020 0.1028977567 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
5 Hb_109002_020 0.1060790105 - - PREDICTED: CTP synthase-like [Jatropha curcas]
6 Hb_001341_100 0.1156501984 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
7 Hb_001486_030 0.1186400801 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003044_030 0.1204156465 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Cicer arietinum]
9 Hb_001214_090 0.1215030107 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
10 Hb_002027_140 0.1246204566 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
11 Hb_001623_160 0.1266765305 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
12 Hb_001332_040 0.1320988618 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
13 Hb_009687_010 0.1322580794 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
14 Hb_004079_080 0.1326244434 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
15 Hb_119494_010 0.135693457 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
16 Hb_016522_010 0.1359676326 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
17 Hb_042474_010 0.1421664618 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
18 Hb_003038_140 0.143431879 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
19 Hb_000071_070 0.1438830301 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
20 Hb_005285_030 0.1445688459 - - hypothetical protein JCGZ_20905 [Jatropha curcas]

Gene co-expression network

sample Hb_004064_010 Hb_004064_010 Hb_003266_100 Hb_003266_100 Hb_004064_010--Hb_003266_100 Hb_105602_010 Hb_105602_010 Hb_004064_010--Hb_105602_010 Hb_000621_020 Hb_000621_020 Hb_004064_010--Hb_000621_020 Hb_109002_020 Hb_109002_020 Hb_004064_010--Hb_109002_020 Hb_001341_100 Hb_001341_100 Hb_004064_010--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_004064_010--Hb_001486_030 Hb_003266_100--Hb_000621_020 Hb_016522_010 Hb_016522_010 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_003266_100--Hb_109002_020 Hb_000665_050 Hb_000665_050 Hb_003266_100--Hb_000665_050 Hb_009687_010 Hb_009687_010 Hb_105602_010--Hb_009687_010 Hb_105602_010--Hb_000621_020 Hb_105602_010--Hb_003266_100 Hb_001332_040 Hb_001332_040 Hb_105602_010--Hb_001332_040 Hb_000103_270 Hb_000103_270 Hb_105602_010--Hb_000103_270 Hb_000621_020--Hb_109002_020 Hb_004079_080 Hb_004079_080 Hb_000621_020--Hb_004079_080 Hb_000621_020--Hb_000103_270 Hb_000175_540 Hb_000175_540 Hb_109002_020--Hb_000175_540 Hb_000504_070 Hb_000504_070 Hb_109002_020--Hb_000504_070 Hb_109002_020--Hb_000103_270 Hb_004631_210 Hb_004631_210 Hb_001341_100--Hb_004631_210 Hb_004993_060 Hb_004993_060 Hb_001341_100--Hb_004993_060 Hb_001341_100--Hb_001486_030 Hb_003442_070 Hb_003442_070 Hb_001341_100--Hb_003442_070 Hb_000465_300 Hb_000465_300 Hb_001341_100--Hb_000465_300 Hb_028811_010 Hb_028811_010 Hb_001486_030--Hb_028811_010 Hb_001486_030--Hb_109002_020 Hb_119494_010 Hb_119494_010 Hb_001486_030--Hb_119494_010 Hb_001486_030--Hb_003442_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41946 5.9287 4.60494 5.1349 3.22103 2.6226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.63834 8.57107 8.03701 16.4398 2.66899

CAGE analysis