Hb_004064_020

Information

Type -
Description -
Location Contig4064: 54273-54704
Sequence    

Annotation

kegg
ID pxb:103959373
description 60S ribosomal protein L19-1
nr
ID EPS67921.1
description hypothetical protein M569_06853, partial [Genlisea aurea]
swissprot
ID Q9LUQ6
description 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1
trembl
ID S8CSR2
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_06853 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l19-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40312: 54359-58752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004064_020 0.0 - - hypothetical protein M569_06853, partial [Genlisea aurea]
2 Hb_108528_010 0.1545628244 - - unnamed protein product [Coffea canephora]
3 Hb_179520_010 0.1547449462 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
4 Hb_105602_020 0.1688601624 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
5 Hb_010174_070 0.1729549445 - - -
6 Hb_003913_080 0.1874774879 - - rpl27A [Hemiselmis andersenii]
7 Hb_008516_040 0.1996136658 - - conserved hypothetical protein [Ricinus communis]
8 Hb_017134_010 0.2001916835 - - HEV1.2 [Hevea brasiliensis]
9 Hb_000103_030 0.2007605184 - - hypothetical protein VITISV_021700 [Vitis vinifera]
10 Hb_004291_010 0.2031394918 - - (R)-limonene synthase, putative [Ricinus communis]
11 Hb_012053_040 0.2033315338 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
12 Hb_007426_050 0.206193484 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
13 Hb_000227_200 0.2080708696 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
14 Hb_000450_020 0.2087737195 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001258_140 0.2097399397 - - -
16 Hb_000720_190 0.21091587 - - unknown [Populus trichocarpa x Populus deltoides]
17 Hb_006342_020 0.2182217448 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001425_050 0.2219966222 - - -
19 Hb_000363_150 0.2245476614 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
20 Hb_000749_240 0.2245815006 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004064_020 Hb_004064_020 Hb_108528_010 Hb_108528_010 Hb_004064_020--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_004064_020--Hb_179520_010 Hb_105602_020 Hb_105602_020 Hb_004064_020--Hb_105602_020 Hb_010174_070 Hb_010174_070 Hb_004064_020--Hb_010174_070 Hb_003913_080 Hb_003913_080 Hb_004064_020--Hb_003913_080 Hb_008516_040 Hb_008516_040 Hb_004064_020--Hb_008516_040 Hb_108528_010--Hb_179520_010 Hb_108528_010--Hb_010174_070 Hb_000720_190 Hb_000720_190 Hb_108528_010--Hb_000720_190 Hb_001902_120 Hb_001902_120 Hb_108528_010--Hb_001902_120 Hb_003052_210 Hb_003052_210 Hb_108528_010--Hb_003052_210 Hb_179520_010--Hb_010174_070 Hb_179520_010--Hb_000720_190 Hb_179520_010--Hb_001902_120 Hb_001842_130 Hb_001842_130 Hb_179520_010--Hb_001842_130 Hb_000103_030 Hb_000103_030 Hb_105602_020--Hb_000103_030 Hb_002989_040 Hb_002989_040 Hb_105602_020--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_105602_020--Hb_089100_050 Hb_003913_050 Hb_003913_050 Hb_105602_020--Hb_003913_050 Hb_000920_320 Hb_000920_320 Hb_105602_020--Hb_000920_320 Hb_010174_070--Hb_001902_120 Hb_064885_080 Hb_064885_080 Hb_010174_070--Hb_064885_080 Hb_001114_340 Hb_001114_340 Hb_010174_070--Hb_001114_340 Hb_000161_150 Hb_000161_150 Hb_003913_080--Hb_000161_150 Hb_001776_170 Hb_001776_170 Hb_003913_080--Hb_001776_170 Hb_002151_050 Hb_002151_050 Hb_003913_080--Hb_002151_050 Hb_005671_020 Hb_005671_020 Hb_003913_080--Hb_005671_020 Hb_000010_410 Hb_000010_410 Hb_003913_080--Hb_000010_410 Hb_150818_020 Hb_150818_020 Hb_008516_040--Hb_150818_020 Hb_000912_020 Hb_000912_020 Hb_008516_040--Hb_000912_020 Hb_008516_040--Hb_108528_010 Hb_008516_040--Hb_179520_010 Hb_002989_060 Hb_002989_060 Hb_008516_040--Hb_002989_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.869367 0.140593 0.529639 2.4953 0.073943 0.177812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.6566 87.8716 97.4293 29.0192 1.46514

CAGE analysis