Hb_004070_020

Information

Type -
Description -
Location Contig4070: 51592-58399
Sequence    

Annotation

kegg
ID rcu:RCOM_1196130
description rhythmically-expressed protein 2 protein, putative
nr
ID XP_002528147.1
description rhythmically-expressed protein 2 protein, putative [Ricinus communis]
swissprot
ID Q5E9D6
description Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Bos taurus GN=HDHD3 PE=2 SV=1
trembl
ID B9SQ78
description Rhythmically-expressed protein 2 protein, putative OS=Ricinus communis GN=RCOM_1196130 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase domain-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40328: 51544-58217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004070_020 0.0 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
2 Hb_000039_220 0.0785281256 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
3 Hb_000468_060 0.0799105433 - - ku P70 DNA helicase, putative [Ricinus communis]
4 Hb_000768_090 0.080434635 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
5 Hb_008511_120 0.0824369178 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
6 Hb_032808_010 0.0835242185 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
7 Hb_000417_130 0.0853897047 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
8 Hb_001357_250 0.091005843 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
9 Hb_002205_090 0.0910548619 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
10 Hb_003226_140 0.0929493479 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
11 Hb_007477_070 0.0930494861 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
12 Hb_001268_240 0.0935957985 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
13 Hb_063716_100 0.0959427237 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
14 Hb_000684_380 0.0960062226 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
15 Hb_001357_350 0.0981307029 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001012_010 0.0984126874 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
17 Hb_000317_240 0.099096364 - - PREDICTED: protein DYAD [Jatropha curcas]
18 Hb_000976_430 0.0993392149 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
19 Hb_001534_120 0.0995600011 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
20 Hb_009545_080 0.1005660164 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]

Gene co-expression network

sample Hb_004070_020 Hb_004070_020 Hb_000039_220 Hb_000039_220 Hb_004070_020--Hb_000039_220 Hb_000468_060 Hb_000468_060 Hb_004070_020--Hb_000468_060 Hb_000768_090 Hb_000768_090 Hb_004070_020--Hb_000768_090 Hb_008511_120 Hb_008511_120 Hb_004070_020--Hb_008511_120 Hb_032808_010 Hb_032808_010 Hb_004070_020--Hb_032808_010 Hb_000417_130 Hb_000417_130 Hb_004070_020--Hb_000417_130 Hb_001133_120 Hb_001133_120 Hb_000039_220--Hb_001133_120 Hb_000039_220--Hb_000768_090 Hb_002303_070 Hb_002303_070 Hb_000039_220--Hb_002303_070 Hb_000317_240 Hb_000317_240 Hb_000039_220--Hb_000317_240 Hb_002197_020 Hb_002197_020 Hb_000039_220--Hb_002197_020 Hb_001357_350 Hb_001357_350 Hb_000039_220--Hb_001357_350 Hb_000019_030 Hb_000019_030 Hb_000468_060--Hb_000019_030 Hb_003226_140 Hb_003226_140 Hb_000468_060--Hb_003226_140 Hb_001575_090 Hb_001575_090 Hb_000468_060--Hb_001575_090 Hb_000468_060--Hb_000768_090 Hb_000035_180 Hb_000035_180 Hb_000468_060--Hb_000035_180 Hb_000120_670 Hb_000120_670 Hb_000468_060--Hb_000120_670 Hb_000768_090--Hb_000317_240 Hb_000684_380 Hb_000684_380 Hb_000768_090--Hb_000684_380 Hb_005054_350 Hb_005054_350 Hb_000768_090--Hb_005054_350 Hb_000215_110 Hb_000215_110 Hb_000768_090--Hb_000215_110 Hb_008511_120--Hb_032808_010 Hb_005271_220 Hb_005271_220 Hb_008511_120--Hb_005271_220 Hb_002232_410 Hb_002232_410 Hb_008511_120--Hb_002232_410 Hb_003918_010 Hb_003918_010 Hb_008511_120--Hb_003918_010 Hb_000521_320 Hb_000521_320 Hb_008511_120--Hb_000521_320 Hb_005357_080 Hb_005357_080 Hb_008511_120--Hb_005357_080 Hb_005730_120 Hb_005730_120 Hb_032808_010--Hb_005730_120 Hb_032808_010--Hb_005271_220 Hb_032808_010--Hb_002303_070 Hb_003994_290 Hb_003994_290 Hb_032808_010--Hb_003994_290 Hb_003376_330 Hb_003376_330 Hb_032808_010--Hb_003376_330 Hb_123915_040 Hb_123915_040 Hb_000417_130--Hb_123915_040 Hb_001357_250 Hb_001357_250 Hb_000417_130--Hb_001357_250 Hb_000417_130--Hb_001357_350 Hb_001268_240 Hb_001268_240 Hb_000417_130--Hb_001268_240 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_063716_100 Hb_063716_100 Hb_000417_130--Hb_063716_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5434 8.67011 24.705 14.8206 18.4383 18.5922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3932 24.2089 17.846 25.3881 8.64841

CAGE analysis