Hb_004072_010

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig4072: 47696-52636
Sequence    

Annotation

kegg
ID rcu:RCOM_1069020
description ccaat-binding transcription factor subunit A, putative
nr
ID XP_012073719.1
description PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8VYK4
description Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1
trembl
ID A0A067LFV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06664 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear transcription factor y subunit b-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40333: 47716-52725 , PASA_asmbl_40334: 51797-52200 , PASA_asmbl_40336: 48726-50578 , PASA_asmbl_40337: 49198-49345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004072_010 0.0 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
2 Hb_004242_100 0.0632855256 - - RNA binding protein, putative [Ricinus communis]
3 Hb_000700_090 0.1033011577 - - protein with unknown function [Ricinus communis]
4 Hb_006816_360 0.1092253195 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
5 Hb_005245_090 0.1095643404 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
6 Hb_098709_010 0.1179099543 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
7 Hb_005941_010 0.1189669124 - - PREDICTED: protein SAND [Jatropha curcas]
8 Hb_001804_060 0.1201453584 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
9 Hb_006602_020 0.1201600104 - - unknown [Medicago truncatula]
10 Hb_000984_190 0.1214489801 - - -
11 Hb_003398_060 0.1227307506 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_004735_010 0.1233705549 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
13 Hb_002263_010 0.1238970642 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
14 Hb_006787_040 0.1243523283 - - polyadenylate-binding protein, putative [Ricinus communis]
15 Hb_000152_140 0.1268014134 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
16 Hb_001437_040 0.1270392751 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
17 Hb_002259_030 0.1297393362 - - conserved hypothetical protein [Ricinus communis]
18 Hb_035524_030 0.1312932671 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003453_010 0.1325939435 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000510_100 0.1337558289 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004072_010 Hb_004072_010 Hb_004242_100 Hb_004242_100 Hb_004072_010--Hb_004242_100 Hb_000700_090 Hb_000700_090 Hb_004072_010--Hb_000700_090 Hb_006816_360 Hb_006816_360 Hb_004072_010--Hb_006816_360 Hb_005245_090 Hb_005245_090 Hb_004072_010--Hb_005245_090 Hb_098709_010 Hb_098709_010 Hb_004072_010--Hb_098709_010 Hb_005941_010 Hb_005941_010 Hb_004072_010--Hb_005941_010 Hb_004242_100--Hb_005941_010 Hb_004242_100--Hb_005245_090 Hb_003050_040 Hb_003050_040 Hb_004242_100--Hb_003050_040 Hb_002263_010 Hb_002263_010 Hb_004242_100--Hb_002263_010 Hb_000705_260 Hb_000705_260 Hb_004242_100--Hb_000705_260 Hb_006602_020 Hb_006602_020 Hb_000700_090--Hb_006602_020 Hb_001902_050 Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_127979_010 Hb_127979_010 Hb_006816_360--Hb_127979_010 Hb_003638_140 Hb_003638_140 Hb_006816_360--Hb_003638_140 Hb_000176_140 Hb_000176_140 Hb_006816_360--Hb_000176_140 Hb_006816_360--Hb_004242_100 Hb_006816_360--Hb_000700_090 Hb_026048_090 Hb_026048_090 Hb_006816_360--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_005245_090--Hb_000771_140 Hb_005245_090--Hb_005941_010 Hb_005245_090--Hb_098709_010 Hb_005245_090--Hb_026048_090 Hb_009510_030 Hb_009510_030 Hb_005245_090--Hb_009510_030 Hb_000365_360 Hb_000365_360 Hb_098709_010--Hb_000365_360 Hb_001437_040 Hb_001437_040 Hb_098709_010--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_033491_010 Hb_033491_010 Hb_098709_010--Hb_033491_010 Hb_005941_010--Hb_000152_140 Hb_005941_010--Hb_003050_040 Hb_005941_010--Hb_000696_110 Hb_000984_190 Hb_000984_190 Hb_005941_010--Hb_000984_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1168.05 202.658 30.2597 80.7418 807.425 2191.67
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1667.1 821.04 931.101 287.96 57.4197

CAGE analysis