Hb_004078_040

Information

Type -
Description -
Location Contig4078: 48210-52542
Sequence    

Annotation

kegg
ID rcu:RCOM_1033330
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_012078118.1
description PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
swissprot
ID Q80Y20
description Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=1 SV=1
trembl
ID A0A067KLS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12011 PE=4 SV=1
Gene Ontology
ID GO:0008168
description alkylated dna repair protein alkb homolog 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40352: 48223-52498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004078_040 0.0 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
2 Hb_000359_060 0.0602941983 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
3 Hb_000393_020 0.0628495349 - - lipid binding protein, putative [Ricinus communis]
4 Hb_000173_410 0.0644217843 - - PREDICTED: BI1-like protein [Jatropha curcas]
5 Hb_004109_220 0.066358945 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
6 Hb_000454_090 0.0664166029 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
7 Hb_000928_070 0.0666623651 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
8 Hb_001300_150 0.0668266788 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
9 Hb_000856_010 0.0682826213 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
10 Hb_000890_150 0.0687509697 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
11 Hb_000140_380 0.070399598 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
12 Hb_000288_030 0.0732595302 - - PREDICTED: syntaxin-32 [Jatropha curcas]
13 Hb_005765_050 0.0742087064 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
14 Hb_000220_100 0.075217082 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
15 Hb_005488_200 0.0771555378 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
16 Hb_012022_040 0.0775253007 - - Protein SIS1, putative [Ricinus communis]
17 Hb_094836_010 0.0777554177 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
18 Hb_149985_010 0.0779037365 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
19 Hb_002620_020 0.0779256126 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
20 Hb_000925_130 0.078575357 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004078_040 Hb_004078_040 Hb_000359_060 Hb_000359_060 Hb_004078_040--Hb_000359_060 Hb_000393_020 Hb_000393_020 Hb_004078_040--Hb_000393_020 Hb_000173_410 Hb_000173_410 Hb_004078_040--Hb_000173_410 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_000454_090 Hb_000454_090 Hb_004078_040--Hb_000454_090 Hb_000928_070 Hb_000928_070 Hb_004078_040--Hb_000928_070 Hb_000890_150 Hb_000890_150 Hb_000359_060--Hb_000890_150 Hb_000220_100 Hb_000220_100 Hb_000359_060--Hb_000220_100 Hb_011218_090 Hb_011218_090 Hb_000359_060--Hb_011218_090 Hb_149985_010 Hb_149985_010 Hb_000359_060--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_000359_060--Hb_168978_010 Hb_000359_060--Hb_000173_410 Hb_004117_260 Hb_004117_260 Hb_000393_020--Hb_004117_260 Hb_000349_260 Hb_000349_260 Hb_000393_020--Hb_000349_260 Hb_001300_150 Hb_001300_150 Hb_000393_020--Hb_001300_150 Hb_000393_020--Hb_000928_070 Hb_001314_070 Hb_001314_070 Hb_000393_020--Hb_001314_070 Hb_000173_410--Hb_000454_090 Hb_000252_100 Hb_000252_100 Hb_000173_410--Hb_000252_100 Hb_000173_410--Hb_000220_100 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_004109_220--Hb_149985_010 Hb_012022_040 Hb_012022_040 Hb_004109_220--Hb_012022_040 Hb_000288_030 Hb_000288_030 Hb_004109_220--Hb_000288_030 Hb_004109_220--Hb_000359_060 Hb_004109_220--Hb_000928_070 Hb_001511_060 Hb_001511_060 Hb_004109_220--Hb_001511_060 Hb_000454_090--Hb_000252_100 Hb_000454_090--Hb_000220_100 Hb_000454_090--Hb_000393_020 Hb_000454_090--Hb_005765_050 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.4997 8.47629 7.99884 15.0712 6.82261 7.18337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4 14.6896 17.5534 8.63296 9.36865

CAGE analysis