Hb_004079_020

Information

Type -
Description -
Location Contig4079: 20036-20260
Sequence    

Annotation

kegg
ID gmx:102669499
description uncharacterized LOC102669499
nr
ID KHN45657.1
description hypothetical protein glysoja_031528 [Glycine soja]
swissprot
ID -
description -
trembl
ID K7LER6
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_020 0.0 - - hypothetical protein glysoja_031528 [Glycine soja]
2 Hb_005914_240 0.279821563 - - PREDICTED: oxidation resistance protein 1 [Jatropha curcas]
3 Hb_006344_010 0.2935930712 - - -
4 Hb_140572_010 0.3035969637 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
5 Hb_123521_010 0.3098193252 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_001277_310 0.3395616739 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
7 Hb_001221_270 0.3452832869 - - -
8 Hb_001021_060 0.3500380242 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_003321_020 0.3654800955 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
10 Hb_002232_450 0.3710995288 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
11 Hb_004413_030 0.3716300392 - - Retrotransposon protein, putative [Theobroma cacao]
12 Hb_007753_020 0.3789634762 - - -
13 Hb_000803_130 0.3804934894 - - conserved hypothetical protein [Ricinus communis]
14 Hb_179112_010 0.3821172507 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
15 Hb_000230_340 0.383043886 - - Transcription elongation factor, putative [Ricinus communis]
16 Hb_000928_050 0.3854685967 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
17 Hb_004429_030 0.387848152 - - hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
18 Hb_001195_390 0.3886476162 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
19 Hb_000445_080 0.391770189 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
20 Hb_159921_010 0.3920712069 - - -

Gene co-expression network

sample Hb_004079_020 Hb_004079_020 Hb_005914_240 Hb_005914_240 Hb_004079_020--Hb_005914_240 Hb_006344_010 Hb_006344_010 Hb_004079_020--Hb_006344_010 Hb_140572_010 Hb_140572_010 Hb_004079_020--Hb_140572_010 Hb_123521_010 Hb_123521_010 Hb_004079_020--Hb_123521_010 Hb_001277_310 Hb_001277_310 Hb_004079_020--Hb_001277_310 Hb_001221_270 Hb_001221_270 Hb_004079_020--Hb_001221_270 Hb_001021_060 Hb_001021_060 Hb_005914_240--Hb_001021_060 Hb_005914_240--Hb_006344_010 Hb_000544_140 Hb_000544_140 Hb_005914_240--Hb_000544_140 Hb_005914_240--Hb_140572_010 Hb_063912_010 Hb_063912_010 Hb_005914_240--Hb_063912_010 Hb_006344_010--Hb_140572_010 Hb_006344_010--Hb_001021_060 Hb_001195_390 Hb_001195_390 Hb_006344_010--Hb_001195_390 Hb_004413_030 Hb_004413_030 Hb_006344_010--Hb_004413_030 Hb_006344_010--Hb_001277_310 Hb_135624_010 Hb_135624_010 Hb_006344_010--Hb_135624_010 Hb_007753_020 Hb_007753_020 Hb_140572_010--Hb_007753_020 Hb_140572_010--Hb_001021_060 Hb_140572_010--Hb_001195_390 Hb_000445_080 Hb_000445_080 Hb_140572_010--Hb_000445_080 Hb_140572_010--Hb_123521_010 Hb_010626_020 Hb_010626_020 Hb_123521_010--Hb_010626_020 Hb_123521_010--Hb_000544_140 Hb_000370_010 Hb_000370_010 Hb_123521_010--Hb_000370_010 Hb_003446_040 Hb_003446_040 Hb_123521_010--Hb_003446_040 Hb_123521_010--Hb_006344_010 Hb_001277_310--Hb_004413_030 Hb_000144_140 Hb_000144_140 Hb_001277_310--Hb_000144_140 Hb_001277_310--Hb_003446_040 Hb_001009_130 Hb_001009_130 Hb_001277_310--Hb_001009_130 Hb_001277_310--Hb_135624_010 Hb_002733_010 Hb_002733_010 Hb_001221_270--Hb_002733_010 Hb_001913_020 Hb_001913_020 Hb_001221_270--Hb_001913_020 Hb_108706_010 Hb_108706_010 Hb_001221_270--Hb_108706_010 Hb_159921_010 Hb_159921_010 Hb_001221_270--Hb_159921_010 Hb_078897_010 Hb_078897_010 Hb_001221_270--Hb_078897_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.436402 0 1.09182 0 0 5.0812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.54133 1.3529 0

CAGE analysis