Hb_004079_030

Information

Type -
Description -
Location Contig4079: 21831-37633
Sequence    

Annotation

kegg
ID rcu:RCOM_1053270
description casein kinase, putative
nr
ID XP_012076669.1
description PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
swissprot
ID P42168
description Casein kinase I isoform alpha OS=Caenorhabditis elegans GN=kin-19 PE=3 SV=1
trembl
ID A0A067KN04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07226 PE=3 SV=1
Gene Ontology
ID GO:0004674
description kinase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40354: 30551-37567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_030 0.0 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
2 Hb_000138_110 0.0790661689 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
3 Hb_002027_040 0.0826765717 - - synapse-associated protein, putative [Ricinus communis]
4 Hb_001811_030 0.0851115611 - - Beta-ureidopropionase, putative [Ricinus communis]
5 Hb_000059_050 0.0870502552 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
6 Hb_002005_020 0.0895171389 - - conserved hypothetical protein [Ricinus communis]
7 Hb_119600_070 0.0902276932 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
8 Hb_001014_040 0.0926108197 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
9 Hb_000567_120 0.0942379249 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
10 Hb_000538_070 0.0945863255 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
11 Hb_000092_010 0.0948946189 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
12 Hb_064441_010 0.0959349458 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
13 Hb_001430_070 0.0960529518 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000161_060 0.0961375712 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
15 Hb_000130_050 0.0973226693 - - 14-3-3 protein, putative [Ricinus communis]
16 Hb_000260_570 0.0973567884 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_005162_070 0.0979434947 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008616_070 0.098631897 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
19 Hb_020805_130 0.099976643 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_164010_030 0.1005419628 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]

Gene co-expression network

sample Hb_004079_030 Hb_004079_030 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_000059_050 Hb_000059_050 Hb_004079_030--Hb_000059_050 Hb_002005_020 Hb_002005_020 Hb_004079_030--Hb_002005_020 Hb_119600_070 Hb_119600_070 Hb_004079_030--Hb_119600_070 Hb_000092_010 Hb_000092_010 Hb_000138_110--Hb_000092_010 Hb_000258_270 Hb_000258_270 Hb_000138_110--Hb_000258_270 Hb_000629_120 Hb_000629_120 Hb_000138_110--Hb_000629_120 Hb_000096_010 Hb_000096_010 Hb_000138_110--Hb_000096_010 Hb_000138_110--Hb_002027_040 Hb_005162_070 Hb_005162_070 Hb_002027_040--Hb_005162_070 Hb_020805_130 Hb_020805_130 Hb_002027_040--Hb_020805_130 Hb_000567_120 Hb_000567_120 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_000260_570 Hb_000260_570 Hb_002027_040--Hb_000260_570 Hb_001014_040 Hb_001014_040 Hb_001811_030--Hb_001014_040 Hb_000922_390 Hb_000922_390 Hb_001811_030--Hb_000922_390 Hb_001507_040 Hb_001507_040 Hb_001811_030--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_001811_030--Hb_000445_040 Hb_008616_070 Hb_008616_070 Hb_001811_030--Hb_008616_070 Hb_003992_170 Hb_003992_170 Hb_000059_050--Hb_003992_170 Hb_000059_050--Hb_119600_070 Hb_001946_330 Hb_001946_330 Hb_000059_050--Hb_001946_330 Hb_000066_080 Hb_000066_080 Hb_000059_050--Hb_000066_080 Hb_000047_030 Hb_000047_030 Hb_000059_050--Hb_000047_030 Hb_004218_110 Hb_004218_110 Hb_002005_020--Hb_004218_110 Hb_000023_090 Hb_000023_090 Hb_002005_020--Hb_000023_090 Hb_002759_060 Hb_002759_060 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_002005_020--Hb_000567_120 Hb_001519_050 Hb_001519_050 Hb_002005_020--Hb_001519_050 Hb_119600_070--Hb_000066_080 Hb_001711_020 Hb_001711_020 Hb_119600_070--Hb_001711_020 Hb_000599_250 Hb_000599_250 Hb_119600_070--Hb_000599_250 Hb_000538_070 Hb_000538_070 Hb_119600_070--Hb_000538_070 Hb_000046_320 Hb_000046_320 Hb_119600_070--Hb_000046_320 Hb_000749_220 Hb_000749_220 Hb_119600_070--Hb_000749_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3651 9.87883 11.0031 23.0069 13.6175 21.3474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4671 24.4109 58.3579 17.7613 18.817

CAGE analysis