Hb_004079_080

Information

Type -
Description -
Location Contig4079: 55668-61950
Sequence    

Annotation

kegg
ID rcu:RCOM_1053130
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_012076671.1
description PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
swissprot
ID P31583
description Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1
trembl
ID A0A067KN09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07231 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rhn1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40362: 59720-60251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_080 0.0 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
2 Hb_000621_020 0.108630105 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
3 Hb_001214_090 0.1161418222 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
4 Hb_001623_160 0.1194563743 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
5 Hb_001971_060 0.122300292 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
6 Hb_016522_010 0.1230120995 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
7 Hb_100147_010 0.1262385308 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
8 Hb_014894_010 0.1264893348 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
9 Hb_002005_100 0.1280098472 - - -
10 Hb_004064_010 0.1326244434 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
11 Hb_003226_120 0.1337133724 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001332_040 0.1337428139 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
13 Hb_119494_010 0.136271871 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
14 Hb_105602_010 0.1376391346 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
15 Hb_042474_010 0.1389826293 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
16 Hb_109002_020 0.1431094281 - - PREDICTED: CTP synthase-like [Jatropha curcas]
17 Hb_000228_110 0.14353611 - - unnamed protein product [Vitis vinifera]
18 Hb_003266_100 0.1441315012 - - Isomerase protein [Gossypium arboreum]
19 Hb_000096_160 0.1447266316 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
20 Hb_012760_040 0.1456562757 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004079_080 Hb_004079_080 Hb_000621_020 Hb_000621_020 Hb_004079_080--Hb_000621_020 Hb_001214_090 Hb_001214_090 Hb_004079_080--Hb_001214_090 Hb_001623_160 Hb_001623_160 Hb_004079_080--Hb_001623_160 Hb_001971_060 Hb_001971_060 Hb_004079_080--Hb_001971_060 Hb_016522_010 Hb_016522_010 Hb_004079_080--Hb_016522_010 Hb_100147_010 Hb_100147_010 Hb_004079_080--Hb_100147_010 Hb_003266_100 Hb_003266_100 Hb_000621_020--Hb_003266_100 Hb_004064_010 Hb_004064_010 Hb_000621_020--Hb_004064_010 Hb_105602_010 Hb_105602_010 Hb_000621_020--Hb_105602_010 Hb_109002_020 Hb_109002_020 Hb_000621_020--Hb_109002_020 Hb_000103_270 Hb_000103_270 Hb_000621_020--Hb_000103_270 Hb_001214_090--Hb_001623_160 Hb_001214_090--Hb_016522_010 Hb_010863_010 Hb_010863_010 Hb_001214_090--Hb_010863_010 Hb_000190_090 Hb_000190_090 Hb_001214_090--Hb_000190_090 Hb_119494_010 Hb_119494_010 Hb_001214_090--Hb_119494_010 Hb_001214_090--Hb_003266_100 Hb_000381_110 Hb_000381_110 Hb_001623_160--Hb_000381_110 Hb_003038_140 Hb_003038_140 Hb_001623_160--Hb_003038_140 Hb_001623_160--Hb_001971_060 Hb_001332_040 Hb_001332_040 Hb_001623_160--Hb_001332_040 Hb_001971_060--Hb_000381_110 Hb_001971_060--Hb_100147_010 Hb_029385_010 Hb_029385_010 Hb_001971_060--Hb_029385_010 Hb_001728_140 Hb_001728_140 Hb_001971_060--Hb_001728_140 Hb_000227_070 Hb_000227_070 Hb_016522_010--Hb_000227_070 Hb_001414_030 Hb_001414_030 Hb_016522_010--Hb_001414_030 Hb_000510_240 Hb_000510_240 Hb_016522_010--Hb_000510_240 Hb_000228_110 Hb_000228_110 Hb_016522_010--Hb_000228_110 Hb_000210_120 Hb_000210_120 Hb_016522_010--Hb_000210_120 Hb_000251_030 Hb_000251_030 Hb_100147_010--Hb_000251_030 Hb_100147_010--Hb_000381_110 Hb_100147_010--Hb_029385_010 Hb_001510_020 Hb_001510_020 Hb_100147_010--Hb_001510_020 Hb_100147_010--Hb_001623_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62326 2.87864 1.52051 5.67534 1.9351 2.13993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.29198 6.07772 5.05695 14.839 3.47745

CAGE analysis