Hb_004079_130

Information

Type -
Description -
Location Contig4079: 81985-84973
Sequence    

Annotation

kegg
ID pop:POPTR_0006s16270g
description hypothetical protein
nr
ID XP_012076676.1
description PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
swissprot
ID Q941B6
description Probable ubiquitin-conjugating enzyme E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=2
trembl
ID A0A067KPF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07235 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40374: 81902-84424 , PASA_asmbl_40375: 84660-84950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_130 0.0 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
2 Hb_000120_810 0.0735842593 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
3 Hb_000227_390 0.0879893064 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
4 Hb_026198_010 0.0897576321 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
5 Hb_001482_050 0.0900378466 - - COR413-PM2, putative [Ricinus communis]
6 Hb_000704_030 0.0932359261 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
7 Hb_012092_050 0.0951341182 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
8 Hb_001825_040 0.0963034846 - - myosin XI, putative [Ricinus communis]
9 Hb_006468_010 0.0974095036 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
10 Hb_115137_010 0.0990413264 - - PREDICTED: probable protein S-acyltransferase 23 isoform X2 [Jatropha curcas]
11 Hb_002311_380 0.10169014 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
12 Hb_001250_050 0.1017206791 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
13 Hb_002232_480 0.1023918208 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
14 Hb_002740_090 0.1029082961 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
15 Hb_000753_160 0.1038087389 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
16 Hb_000890_160 0.1047595349 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
17 Hb_001279_190 0.104888418 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
18 Hb_002869_050 0.1055022932 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
19 Hb_001366_090 0.1067417454 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
20 Hb_007850_030 0.1071066458 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]

Gene co-expression network

sample Hb_004079_130 Hb_004079_130 Hb_000120_810 Hb_000120_810 Hb_004079_130--Hb_000120_810 Hb_000227_390 Hb_000227_390 Hb_004079_130--Hb_000227_390 Hb_026198_010 Hb_026198_010 Hb_004079_130--Hb_026198_010 Hb_001482_050 Hb_001482_050 Hb_004079_130--Hb_001482_050 Hb_000704_030 Hb_000704_030 Hb_004079_130--Hb_000704_030 Hb_012092_050 Hb_012092_050 Hb_004079_130--Hb_012092_050 Hb_000120_810--Hb_000704_030 Hb_000120_810--Hb_026198_010 Hb_000603_160 Hb_000603_160 Hb_000120_810--Hb_000603_160 Hb_189216_010 Hb_189216_010 Hb_000120_810--Hb_189216_010 Hb_000680_120 Hb_000680_120 Hb_000120_810--Hb_000680_120 Hb_001279_190 Hb_001279_190 Hb_000227_390--Hb_001279_190 Hb_007483_070 Hb_007483_070 Hb_000227_390--Hb_007483_070 Hb_000227_390--Hb_000120_810 Hb_003540_050 Hb_003540_050 Hb_000227_390--Hb_003540_050 Hb_000703_190 Hb_000703_190 Hb_000227_390--Hb_000703_190 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_006637_030 Hb_006637_030 Hb_026198_010--Hb_006637_030 Hb_002693_030 Hb_002693_030 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090 Hb_007850_030 Hb_007850_030 Hb_001482_050--Hb_007850_030 Hb_000260_470 Hb_000260_470 Hb_001482_050--Hb_000260_470 Hb_133004_010 Hb_133004_010 Hb_001482_050--Hb_133004_010 Hb_001482_050--Hb_000227_390 Hb_001660_100 Hb_001660_100 Hb_001482_050--Hb_001660_100 Hb_000704_030--Hb_189216_010 Hb_005563_070 Hb_005563_070 Hb_000704_030--Hb_005563_070 Hb_007839_020 Hb_007839_020 Hb_000704_030--Hb_007839_020 Hb_172426_030 Hb_172426_030 Hb_000704_030--Hb_172426_030 Hb_000704_030--Hb_026198_010 Hb_007257_060 Hb_007257_060 Hb_012092_050--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_012092_050--Hb_002014_010 Hb_001300_280 Hb_001300_280 Hb_012092_050--Hb_001300_280 Hb_001635_110 Hb_001635_110 Hb_012092_050--Hb_001635_110 Hb_006588_060 Hb_006588_060 Hb_012092_050--Hb_006588_060 Hb_004109_320 Hb_004109_320 Hb_012092_050--Hb_004109_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70978 3.32896 4.44013 5.12338 1.38409 1.18447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41054 1.97904 1.28503 2.87452 1.77865

CAGE analysis