Hb_004090_010

Information

Type -
Description -
Location Contig4090: 27987-28957
Sequence    

Annotation

kegg
ID rcu:RCOM_0393500
description Major latex protein, putative
nr
ID XP_002531396.1
description Major latex protein, putative [Ricinus communis]
swissprot
ID Q93VR4
description MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=2 SV=1
trembl
ID B9SZH7
description Major latex protein, putative OS=Ricinus communis GN=RCOM_0393500 PE=4 SV=1
Gene Ontology
ID GO:0009507
description mlp-like protein 423

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40400: 28082-28871
cDNA
(Sanger)
(ID:Location)		 004_B17.ab1: 28086-28818 , 008_I24.ab1: 28084-28861 , 009_P15.ab1: 28086-28871 , 011_D02.ab1: 28082-28836 , 013_D20.ab1: 28082-28858 , 014_A21.ab1: 28082-28845 , 014_F08.ab1: 28082-28790 , 015_F03.ab1: 28082-28843 , 016_O11.ab1: 28080-28751 , 017_K02.ab1: 28080-28818 , 018_I07.ab1: 28082-28786 , 019_D11.ab1: 28082-28791 , 019_F15.ab1: 28084-28747 , 019_L23.ab1: 28082-28763 , 020_H09.ab1: 28080-28860 , 021_P07.ab1: 28082-28867 , 022_N24.ab1: 28082-28839 , 026_G04.ab1: 28082-28797 , 026_H16.ab1: 28088-28799 , 028_D11.ab1: 28082-28751 , 030_O01.ab1: 28126-28752 , 032_H13.ab1: 28082-28751 , 033_H24.ab1: 28119-28742 , 036_D07.ab1: 28082-28818 , 037_H13.ab1: 28086-28802 , 039_M02.ab1: 28080-28860 , 040_H16.ab1: 28086-28802 , 040_P21.ab1: 28082-28837 , 041_B09.ab1: 28084-28749 , 043_F24.ab1: 28082-28865 , 043_I22.ab1: 28082-28845 , 045_L08.ab1: 28082-28797 , 047_D03.ab1: 28082-28867 , 049_D12.ab1: 28086-28802 , 051_I04.ab1: 28080-28818

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004090_010 0.0 - - Major latex protein, putative [Ricinus communis]
2 Hb_000329_220 0.0648675537 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
3 Hb_036377_010 0.085371424 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
4 Hb_007741_010 0.0858017759 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
5 Hb_000190_200 0.0927590678 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
6 Hb_000556_050 0.1003147053 - - -
7 Hb_000152_200 0.1018075341 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
8 Hb_000005_160 0.1093812299 - - tonoplast intrinsic protein, putative [Ricinus communis]
9 Hb_171810_020 0.1097584628 - - peptide/glutathione transporter OPT1 [Vitis vinifera]
10 Hb_004881_040 0.1154427496 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
11 Hb_005253_050 0.120890787 - - Isoflavone reductase, putative [Ricinus communis]
12 Hb_177533_010 0.1249609426 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
13 Hb_003398_110 0.1250274391 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
14 Hb_000544_150 0.1270404258 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
15 Hb_005198_010 0.1271987341 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
16 Hb_162008_020 0.1330327265 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
17 Hb_017358_060 0.1446789498 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
18 Hb_008252_010 0.1519726774 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
19 Hb_007157_050 0.153193263 - - hypothetical protein RCOM_0711500 [Ricinus communis]
20 Hb_121680_010 0.1535560535 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004090_010 Hb_004090_010 Hb_000329_220 Hb_000329_220 Hb_004090_010--Hb_000329_220 Hb_036377_010 Hb_036377_010 Hb_004090_010--Hb_036377_010 Hb_007741_010 Hb_007741_010 Hb_004090_010--Hb_007741_010 Hb_000190_200 Hb_000190_200 Hb_004090_010--Hb_000190_200 Hb_000556_050 Hb_000556_050 Hb_004090_010--Hb_000556_050 Hb_000152_200 Hb_000152_200 Hb_004090_010--Hb_000152_200 Hb_000329_220--Hb_000190_200 Hb_000329_220--Hb_007741_010 Hb_004881_040 Hb_004881_040 Hb_000329_220--Hb_004881_040 Hb_000544_150 Hb_000544_150 Hb_000329_220--Hb_000544_150 Hb_162008_020 Hb_162008_020 Hb_000329_220--Hb_162008_020 Hb_171810_020 Hb_171810_020 Hb_036377_010--Hb_171810_020 Hb_005253_050 Hb_005253_050 Hb_036377_010--Hb_005253_050 Hb_036377_010--Hb_000329_220 Hb_097104_010 Hb_097104_010 Hb_036377_010--Hb_097104_010 Hb_036377_010--Hb_000556_050 Hb_000005_160 Hb_000005_160 Hb_007741_010--Hb_000005_160 Hb_007741_010--Hb_000544_150 Hb_007741_010--Hb_000190_200 Hb_007741_010--Hb_000152_200 Hb_007741_010--Hb_004881_040 Hb_000190_200--Hb_004881_040 Hb_000190_200--Hb_162008_020 Hb_000190_200--Hb_000544_150 Hb_008252_010 Hb_008252_010 Hb_000190_200--Hb_008252_010 Hb_005198_010 Hb_005198_010 Hb_000556_050--Hb_005198_010 Hb_000556_050--Hb_000005_160 Hb_000556_050--Hb_000152_200 Hb_019762_030 Hb_019762_030 Hb_000556_050--Hb_019762_030 Hb_177533_010 Hb_177533_010 Hb_000556_050--Hb_177533_010 Hb_000556_050--Hb_007741_010 Hb_000152_200--Hb_000005_160 Hb_000152_200--Hb_177533_010 Hb_000152_200--Hb_000544_150 Hb_000152_200--Hb_005198_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.026101 1.11484 1486.61 19.8544 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0190207 84.8204

CAGE analysis