Hb_004092_010

Information

Type -
Description -
Location Contig4092: 3212-8523
Sequence    

Annotation

kegg
ID rcu:RCOM_0146290
description transferase, transferring glycosyl groups, putative (EC:2.4.1.34)
nr
ID XP_002528124.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9LXT9
description Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3
trembl
ID B9SQ55
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0146290 PE=4 SV=1
Gene Ontology
ID GO:0000148
description callose synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004092_010 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_000525_040 0.1566317338 - - -
3 Hb_010368_070 0.1669192604 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011616_030 0.1670133844 - - -
5 Hb_005057_010 0.1704463887 - - -
6 Hb_095397_010 0.1809483015 - - hypothetical protein 25 [Hevea brasiliensis]
7 Hb_001146_070 0.1813721435 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
8 Hb_043637_010 0.1838010653 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
9 Hb_000329_620 0.1841382611 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
10 Hb_006557_010 0.1871708983 - - -
11 Hb_141838_010 0.1880369847 - - -
12 Hb_053262_010 0.1909027136 - - -
13 Hb_170116_010 0.192368229 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
14 Hb_001628_110 0.1952383948 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
15 Hb_007158_030 0.1960508494 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_002701_130 0.1963431795 transcription factor TF Family: MYB Myb domain protein 121 [Theobroma cacao]
17 Hb_011515_030 0.2008151448 - - -
18 Hb_003304_080 0.2015834895 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
19 Hb_001268_230 0.2088743994 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
20 Hb_000175_530 0.2123533064 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]

Gene co-expression network

sample Hb_004092_010 Hb_004092_010 Hb_000525_040 Hb_000525_040 Hb_004092_010--Hb_000525_040 Hb_010368_070 Hb_010368_070 Hb_004092_010--Hb_010368_070 Hb_011616_030 Hb_011616_030 Hb_004092_010--Hb_011616_030 Hb_005057_010 Hb_005057_010 Hb_004092_010--Hb_005057_010 Hb_095397_010 Hb_095397_010 Hb_004092_010--Hb_095397_010 Hb_001146_070 Hb_001146_070 Hb_004092_010--Hb_001146_070 Hb_000525_040--Hb_010368_070 Hb_002903_120 Hb_002903_120 Hb_000525_040--Hb_002903_120 Hb_004032_460 Hb_004032_460 Hb_000525_040--Hb_004032_460 Hb_019936_010 Hb_019936_010 Hb_000525_040--Hb_019936_010 Hb_007634_020 Hb_007634_020 Hb_000525_040--Hb_007634_020 Hb_000525_040--Hb_011616_030 Hb_010368_070--Hb_002903_120 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_032264_130 Hb_032264_130 Hb_011616_030--Hb_032264_130 Hb_170116_010 Hb_170116_010 Hb_011616_030--Hb_170116_010 Hb_000523_020 Hb_000523_020 Hb_011616_030--Hb_000523_020 Hb_011616_030--Hb_019936_010 Hb_002388_060 Hb_002388_060 Hb_011616_030--Hb_002388_060 Hb_011616_030--Hb_095397_010 Hb_027556_010 Hb_027556_010 Hb_005057_010--Hb_027556_010 Hb_000140_150 Hb_000140_150 Hb_005057_010--Hb_000140_150 Hb_005057_010--Hb_010368_070 Hb_011716_040 Hb_011716_040 Hb_005057_010--Hb_011716_040 Hb_005057_010--Hb_095397_010 Hb_005057_010--Hb_000525_040 Hb_007810_040 Hb_007810_040 Hb_095397_010--Hb_007810_040 Hb_003906_120 Hb_003906_120 Hb_095397_010--Hb_003906_120 Hb_003304_080 Hb_003304_080 Hb_095397_010--Hb_003304_080 Hb_002232_180 Hb_002232_180 Hb_095397_010--Hb_002232_180 Hb_095397_010--Hb_000050_120 Hb_043637_010 Hb_043637_010 Hb_095397_010--Hb_043637_010 Hb_005271_030 Hb_005271_030 Hb_001146_070--Hb_005271_030 Hb_000175_530 Hb_000175_530 Hb_001146_070--Hb_000175_530 Hb_029464_010 Hb_029464_010 Hb_001146_070--Hb_029464_010 Hb_064201_010 Hb_064201_010 Hb_001146_070--Hb_064201_010 Hb_007158_030 Hb_007158_030 Hb_001146_070--Hb_007158_030 Hb_001017_100 Hb_001017_100 Hb_001146_070--Hb_001017_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.11412 0.0112306 0 0.0345466 9.6679 2.67148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.67188 1.29518 1.0709 0.0644876 0

CAGE analysis