Hb_004092_020

Information

Type transcription factor
Description TF Family: GRAS
Location Contig4092: 50764-52101
Sequence    

Annotation

kegg
ID rcu:RCOM_1546390
description DELLA protein DWARF8, putative
nr
ID XP_012084660.1
description PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
swissprot
ID Q9SN22
description Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1
trembl
ID A0A067JWZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20291 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40401: 50840-50972 , PASA_asmbl_40402: 51078-51223 , PASA_asmbl_40403: 51393-52183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004092_020 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
2 Hb_002284_140 0.0003971043 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
3 Hb_000556_210 0.005496022 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
4 Hb_002106_020 0.0080822453 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
5 Hb_000053_140 0.0095762625 - - conserved hypothetical protein [Ricinus communis]
6 Hb_183658_010 0.0110364836 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_151697_010 0.0121408339 - - clathrin assembly protein, putative [Ricinus communis]
8 Hb_009711_060 0.0124023389 - - -
9 Hb_005663_020 0.0136524769 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
10 Hb_001645_080 0.0141809668 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
11 Hb_001488_170 0.0161790797 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
12 Hb_001104_030 0.0193456106 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
13 Hb_000760_090 0.0196313273 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
14 Hb_005065_090 0.0198725774 - - zinc/iron transporter, putative [Ricinus communis]
15 Hb_004375_090 0.0226082309 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
16 Hb_001946_090 0.0249373422 - - -
17 Hb_010543_010 0.0259800673 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
18 Hb_141016_010 0.0260322238 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
19 Hb_000152_690 0.0287310612 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
20 Hb_102933_010 0.0338998947 - - Pectate lyase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004092_020 Hb_004092_020 Hb_002284_140 Hb_002284_140 Hb_004092_020--Hb_002284_140 Hb_000556_210 Hb_000556_210 Hb_004092_020--Hb_000556_210 Hb_002106_020 Hb_002106_020 Hb_004092_020--Hb_002106_020 Hb_000053_140 Hb_000053_140 Hb_004092_020--Hb_000053_140 Hb_183658_010 Hb_183658_010 Hb_004092_020--Hb_183658_010 Hb_151697_010 Hb_151697_010 Hb_004092_020--Hb_151697_010 Hb_002284_140--Hb_000556_210 Hb_002284_140--Hb_002106_020 Hb_002284_140--Hb_000053_140 Hb_002284_140--Hb_183658_010 Hb_002284_140--Hb_151697_010 Hb_000556_210--Hb_002106_020 Hb_000556_210--Hb_183658_010 Hb_000556_210--Hb_151697_010 Hb_009711_060 Hb_009711_060 Hb_000556_210--Hb_009711_060 Hb_002106_020--Hb_183658_010 Hb_002106_020--Hb_151697_010 Hb_002106_020--Hb_009711_060 Hb_005663_020 Hb_005663_020 Hb_000053_140--Hb_005663_020 Hb_001645_080 Hb_001645_080 Hb_000053_140--Hb_001645_080 Hb_001488_170 Hb_001488_170 Hb_000053_140--Hb_001488_170 Hb_000760_090 Hb_000760_090 Hb_000053_140--Hb_000760_090 Hb_183658_010--Hb_151697_010 Hb_183658_010--Hb_009711_060 Hb_001104_030 Hb_001104_030 Hb_183658_010--Hb_001104_030 Hb_151697_010--Hb_009711_060 Hb_151697_010--Hb_001104_030 Hb_004375_090 Hb_004375_090 Hb_151697_010--Hb_004375_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.299082 0.233608 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis