Hb_004093_020

Information

Type -
Description -
Location Contig4093: 30633-35911
Sequence    

Annotation

kegg
ID tcc:TCM_038419
description Calcium-binding EF-hand family protein
nr
ID XP_007013873.1
description Calcium-binding EF-hand family protein [Theobroma cacao]
swissprot
ID P42322
description Calcineurin subunit B OS=Naegleria gruberi GN=CNB1 PE=3 SV=1
trembl
ID A0A061GQP8
description Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_038419 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcineurin subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40404: 30666-35998 , PASA_asmbl_40405: 30666-31029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004093_020 0.0 - - Calcium-binding EF-hand family protein [Theobroma cacao]
2 Hb_001951_130 0.1091406344 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
3 Hb_001377_450 0.1204841771 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
4 Hb_000365_130 0.125877607 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
5 Hb_083380_020 0.1267001664 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
6 Hb_001056_030 0.1282050999 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
7 Hb_001863_130 0.1320191524 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
8 Hb_000359_150 0.1355198978 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
9 Hb_010368_050 0.1398677703 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
10 Hb_003935_060 0.1400636476 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
11 Hb_000392_340 0.1418455216 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
12 Hb_011330_020 0.1431429353 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
13 Hb_005000_330 0.1435765019 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007101_110 0.1443322811 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
15 Hb_004230_020 0.1477802024 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
16 Hb_000832_190 0.1477965142 - - Rab3 [Hevea brasiliensis]
17 Hb_004176_070 0.14805047 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
18 Hb_000429_040 0.1487907091 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
19 Hb_001250_070 0.1494880602 - - ATP-citrate synthase, putative [Ricinus communis]
20 Hb_004041_020 0.1501850039 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]

Gene co-expression network

sample Hb_004093_020 Hb_004093_020 Hb_001951_130 Hb_001951_130 Hb_004093_020--Hb_001951_130 Hb_001377_450 Hb_001377_450 Hb_004093_020--Hb_001377_450 Hb_000365_130 Hb_000365_130 Hb_004093_020--Hb_000365_130 Hb_083380_020 Hb_083380_020 Hb_004093_020--Hb_083380_020 Hb_001056_030 Hb_001056_030 Hb_004093_020--Hb_001056_030 Hb_001863_130 Hb_001863_130 Hb_004093_020--Hb_001863_130 Hb_000127_140 Hb_000127_140 Hb_001951_130--Hb_000127_140 Hb_010368_050 Hb_010368_050 Hb_001951_130--Hb_010368_050 Hb_000392_340 Hb_000392_340 Hb_001951_130--Hb_000392_340 Hb_005054_080 Hb_005054_080 Hb_001951_130--Hb_005054_080 Hb_008147_090 Hb_008147_090 Hb_001951_130--Hb_008147_090 Hb_000062_330 Hb_000062_330 Hb_001951_130--Hb_000062_330 Hb_000429_040 Hb_000429_040 Hb_001377_450--Hb_000429_040 Hb_000832_190 Hb_000832_190 Hb_001377_450--Hb_000832_190 Hb_015299_030 Hb_015299_030 Hb_001377_450--Hb_015299_030 Hb_028396_010 Hb_028396_010 Hb_001377_450--Hb_028396_010 Hb_007894_170 Hb_007894_170 Hb_001377_450--Hb_007894_170 Hb_001073_080 Hb_001073_080 Hb_001377_450--Hb_001073_080 Hb_005167_010 Hb_005167_010 Hb_000365_130--Hb_005167_010 Hb_007975_060 Hb_007975_060 Hb_000365_130--Hb_007975_060 Hb_006132_090 Hb_006132_090 Hb_000365_130--Hb_006132_090 Hb_003119_060 Hb_003119_060 Hb_000365_130--Hb_003119_060 Hb_003935_060 Hb_003935_060 Hb_000365_130--Hb_003935_060 Hb_004965_110 Hb_004965_110 Hb_000365_130--Hb_004965_110 Hb_083380_020--Hb_010368_050 Hb_083380_020--Hb_008147_090 Hb_007101_110 Hb_007101_110 Hb_083380_020--Hb_007101_110 Hb_083380_020--Hb_001951_130 Hb_000181_350 Hb_000181_350 Hb_083380_020--Hb_000181_350 Hb_001511_260 Hb_001511_260 Hb_083380_020--Hb_001511_260 Hb_011330_020 Hb_011330_020 Hb_001056_030--Hb_011330_020 Hb_000877_080 Hb_000877_080 Hb_001056_030--Hb_000877_080 Hb_001056_030--Hb_000429_040 Hb_000394_180 Hb_000394_180 Hb_001056_030--Hb_000394_180 Hb_002972_010 Hb_002972_010 Hb_001056_030--Hb_002972_010 Hb_000413_240 Hb_000413_240 Hb_001056_030--Hb_000413_240 Hb_003582_070 Hb_003582_070 Hb_001863_130--Hb_003582_070 Hb_002909_020 Hb_002909_020 Hb_001863_130--Hb_002909_020 Hb_001863_130--Hb_001511_260 Hb_001863_130--Hb_001377_450 Hb_001234_070 Hb_001234_070 Hb_001863_130--Hb_001234_070 Hb_010560_030 Hb_010560_030 Hb_001863_130--Hb_010560_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.52325 2.01811 14.6544 18.9928 3.84011 4.84959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4215 14.4188 4.90898 3.17077 7.50959

CAGE analysis