Hb_004093_090

Information

Type -
Description -
Location Contig4093: 187113-190354
Sequence    

Annotation

kegg
ID rcu:RCOM_1406970
description cak assembly factor, putative
nr
ID XP_012071556.1
description PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
swissprot
ID P51950
description CDK-activating kinase assembly factor MAT1 OS=Marthasterias glacialis PE=1 SV=1
trembl
ID A0A067L2M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04068 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cak assembly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40407: 187148-190399
cDNA
(Sanger)
(ID:Location)		 048_B08.ab1: 187400-190397

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004093_090 0.0 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
2 Hb_000610_010 0.0558365319 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
3 Hb_005588_030 0.0663338712 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
4 Hb_120410_010 0.0702865906 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
5 Hb_000959_210 0.0704969334 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
6 Hb_000362_200 0.0710476925 - - exonuclease family protein [Populus trichocarpa]
7 Hb_000009_530 0.0719003286 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
8 Hb_009421_020 0.0723091563 - - PREDICTED: caltractin-like [Jatropha curcas]
9 Hb_003935_020 0.0724175106 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000866_410 0.0734311181 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
11 Hb_000853_430 0.0748720892 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
12 Hb_003687_230 0.076631521 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
13 Hb_029142_060 0.07674435 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
14 Hb_000866_010 0.0790768074 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000260_100 0.0793788567 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000638_290 0.0798017858 - - PREDICTED: 5' exonuclease Apollo [Jatropha curcas]
17 Hb_001305_010 0.0802587813 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
18 Hb_020367_050 0.081510083 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
19 Hb_001512_060 0.081517619 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
20 Hb_004116_060 0.0827926676 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]

Gene co-expression network

sample Hb_004093_090 Hb_004093_090 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_120410_010 Hb_120410_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_000009_530 Hb_000009_530 Hb_004093_090--Hb_000009_530 Hb_000610_010--Hb_000009_530 Hb_003687_230 Hb_003687_230 Hb_000610_010--Hb_003687_230 Hb_000107_190 Hb_000107_190 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_003292_040 Hb_003292_040 Hb_000610_010--Hb_003292_040 Hb_001012_010 Hb_001012_010 Hb_005588_030--Hb_001012_010 Hb_004116_060 Hb_004116_060 Hb_005588_030--Hb_004116_060 Hb_000107_030 Hb_000107_030 Hb_005588_030--Hb_000107_030 Hb_005588_030--Hb_073973_130 Hb_005588_030--Hb_120410_010 Hb_008453_140 Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_120410_010--Hb_004116_060 Hb_001142_030 Hb_001142_030 Hb_120410_010--Hb_001142_030 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090 Hb_003935_020 Hb_003935_020 Hb_000959_210--Hb_003935_020 Hb_002652_030 Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_000959_210--Hb_120410_010 Hb_004032_430 Hb_004032_430 Hb_000959_210--Hb_004032_430 Hb_000959_210--Hb_002530_030 Hb_001512_060 Hb_001512_060 Hb_000362_200--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_000362_200--Hb_001534_120 Hb_009421_020 Hb_009421_020 Hb_000362_200--Hb_009421_020 Hb_005186_050 Hb_005186_050 Hb_000362_200--Hb_005186_050 Hb_007477_070 Hb_007477_070 Hb_000362_200--Hb_007477_070 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_000009_530--Hb_003687_230 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_000009_530--Hb_003292_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.4826 21.5312 35.5123 20.8375 36.474 28.0854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6928 46.4586 24.4843 16.1734 17.7205

CAGE analysis