Hb_004096_020

Information

Type -
Description -
Location Contig4096: 9800-10553
Sequence    

Annotation

kegg
ID fve:101305397
description KH domain-containing protein At4g18375-like
nr
ID XP_011468639.1
description PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
swissprot
ID Q9SR13
description Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1
trembl
ID A0A096RZ54
description Uncharacterized protein OS=Zea mays GN=Zm.118320 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40414: 8609-26237 , PASA_asmbl_40415: 8749-8979
cDNA
(Sanger)
(ID:Location)		 040_M19.ab1: 8637-10408

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_020 0.0 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
2 Hb_046615_020 0.0663043854 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
3 Hb_001871_040 0.0707085556 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
4 Hb_003406_040 0.0731793401 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
5 Hb_123777_030 0.0740397956 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
6 Hb_000195_020 0.0761517277 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
7 Hb_000357_080 0.0766361215 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Jatropha curcas]
8 Hb_004055_040 0.0781894932 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
9 Hb_001975_020 0.079178309 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
10 Hb_004128_080 0.0804820256 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
11 Hb_033834_010 0.0805212443 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_000327_310 0.0818884254 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
13 Hb_002928_060 0.0852634745 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
14 Hb_022408_010 0.0853109207 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
15 Hb_001366_040 0.0864034606 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
16 Hb_003656_160 0.0872034834 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
17 Hb_006915_060 0.0874928763 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
18 Hb_002043_170 0.0889107362 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
19 Hb_175338_020 0.0892737299 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
20 Hb_001437_100 0.0901898941 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004096_020 Hb_004096_020 Hb_046615_020 Hb_046615_020 Hb_004096_020--Hb_046615_020 Hb_001871_040 Hb_001871_040 Hb_004096_020--Hb_001871_040 Hb_003406_040 Hb_003406_040 Hb_004096_020--Hb_003406_040 Hb_123777_030 Hb_123777_030 Hb_004096_020--Hb_123777_030 Hb_000195_020 Hb_000195_020 Hb_004096_020--Hb_000195_020 Hb_000357_080 Hb_000357_080 Hb_004096_020--Hb_000357_080 Hb_001975_020 Hb_001975_020 Hb_046615_020--Hb_001975_020 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_000230_370 Hb_000230_370 Hb_046615_020--Hb_000230_370 Hb_031754_010 Hb_031754_010 Hb_046615_020--Hb_031754_010 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_001871_040--Hb_123777_030 Hb_004055_040 Hb_004055_040 Hb_001871_040--Hb_004055_040 Hb_063047_010 Hb_063047_010 Hb_001871_040--Hb_063047_010 Hb_001871_040--Hb_003406_040 Hb_002928_060 Hb_002928_060 Hb_001871_040--Hb_002928_060 Hb_003406_040--Hb_123777_030 Hb_000005_380 Hb_000005_380 Hb_003406_040--Hb_000005_380 Hb_002150_030 Hb_002150_030 Hb_003406_040--Hb_002150_030 Hb_007407_040 Hb_007407_040 Hb_003406_040--Hb_007407_040 Hb_123777_030--Hb_000005_380 Hb_007586_030 Hb_007586_030 Hb_123777_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_123777_030--Hb_000977_180 Hb_123777_030--Hb_004055_040 Hb_001797_050 Hb_001797_050 Hb_000195_020--Hb_001797_050 Hb_005532_050 Hb_005532_050 Hb_000195_020--Hb_005532_050 Hb_003938_080 Hb_003938_080 Hb_000195_020--Hb_003938_080 Hb_033834_010 Hb_033834_010 Hb_000195_020--Hb_033834_010 Hb_009411_010 Hb_009411_010 Hb_000195_020--Hb_009411_010 Hb_175338_020 Hb_175338_020 Hb_000357_080--Hb_175338_020 Hb_000357_080--Hb_046615_020 Hb_025477_060 Hb_025477_060 Hb_000357_080--Hb_025477_060 Hb_000327_310 Hb_000327_310 Hb_000357_080--Hb_000327_310 Hb_007885_070 Hb_007885_070 Hb_000357_080--Hb_007885_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.6183 22.4681 12.508 7.00778 46.4401 56.5449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6002 11.556 29.5261 12.2563 16.3603

CAGE analysis