Hb_004096_030

Information

Type -
Description -
Location Contig4096: 21483-26066
Sequence    

Annotation

kegg
ID cic:CICLE_v10011187mg
description hypothetical protein
nr
ID XP_012077972.1
description PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067KD45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12979 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40414: 8609-26237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_030 0.0 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
2 Hb_004934_090 0.056261332 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
3 Hb_003406_010 0.0609329936 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
4 Hb_005245_130 0.0658805228 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
5 Hb_001019_230 0.0662978282 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
6 Hb_000134_090 0.0679711798 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
7 Hb_002030_030 0.0687761489 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
8 Hb_000373_240 0.0741544938 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
9 Hb_010931_080 0.0741749743 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
10 Hb_009265_080 0.074691517 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
11 Hb_000889_020 0.0748615758 - - ribosome biogenesis protein brix, putative [Ricinus communis]
12 Hb_000089_220 0.0751472863 - - PREDICTED: protein FAM133-like [Populus euphratica]
13 Hb_001258_090 0.0765650173 - - PREDICTED: protein spt2-like [Jatropha curcas]
14 Hb_007218_080 0.0770997548 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
15 Hb_033642_010 0.078921566 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
16 Hb_004447_060 0.0801140571 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
17 Hb_004370_030 0.0814924081 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
18 Hb_003994_240 0.0818850192 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
19 Hb_005532_050 0.0821401375 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
20 Hb_001862_190 0.0828079452 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004096_030 Hb_004096_030 Hb_004934_090 Hb_004934_090 Hb_004096_030--Hb_004934_090 Hb_003406_010 Hb_003406_010 Hb_004096_030--Hb_003406_010 Hb_005245_130 Hb_005245_130 Hb_004096_030--Hb_005245_130 Hb_001019_230 Hb_001019_230 Hb_004096_030--Hb_001019_230 Hb_000134_090 Hb_000134_090 Hb_004096_030--Hb_000134_090 Hb_002030_030 Hb_002030_030 Hb_004096_030--Hb_002030_030 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004934_090--Hb_005245_130 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_003406_010--Hb_005245_130 Hb_007218_080 Hb_007218_080 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_005245_130--Hb_000803_300 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210 Hb_031939_010 Hb_031939_010 Hb_005245_130--Hb_031939_010 Hb_001019_230--Hb_004934_090 Hb_154745_010 Hb_154745_010 Hb_001019_230--Hb_154745_010 Hb_004447_060 Hb_004447_060 Hb_001019_230--Hb_004447_060 Hb_000661_050 Hb_000661_050 Hb_001019_230--Hb_000661_050 Hb_001862_190 Hb_001862_190 Hb_001019_230--Hb_001862_190 Hb_000134_090--Hb_002030_030 Hb_000134_090--Hb_001862_190 Hb_000134_090--Hb_004934_090 Hb_006922_100 Hb_006922_100 Hb_000134_090--Hb_006922_100 Hb_004724_200 Hb_004724_200 Hb_000134_090--Hb_004724_200 Hb_003728_030 Hb_003728_030 Hb_002030_030--Hb_003728_030 Hb_002030_030--Hb_004724_200 Hb_033642_010 Hb_033642_010 Hb_002030_030--Hb_033642_010 Hb_002079_010 Hb_002079_010 Hb_002030_030--Hb_002079_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.2293 18.0953 13.1851 9.15483 28.3855 46.5465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8743 23.9786 21.2485 13.7792 13.5698

CAGE analysis