Hb_004096_050

Information

Type -
Description -
Location Contig4096: 51845-54647
Sequence    

Annotation

kegg
ID cic:CICLE_v10011466mg
description hypothetical protein
nr
ID KJB37977.1
description hypothetical protein B456_006G229700 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NXA9
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G229700 PE=4 SV=1
Gene Ontology
ID GO:0005789
description alg8 glycosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40418: 52325-87186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_050 0.0 - - hypothetical protein B456_006G229700 [Gossypium raimondii]
2 Hb_004319_080 0.1030658513 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
3 Hb_000302_310 0.1107308806 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
4 Hb_000579_070 0.1135545176 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
5 Hb_001205_250 0.1150296821 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
6 Hb_005618_050 0.122417395 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
7 Hb_002681_090 0.1230685664 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
8 Hb_000007_390 0.1246168311 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
9 Hb_006569_030 0.1250612059 - - PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]
10 Hb_002471_240 0.1251288858 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
11 Hb_000556_190 0.1254953102 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
12 Hb_000163_220 0.1258663568 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
13 Hb_000120_550 0.1265243116 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
14 Hb_001089_070 0.1265630579 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
15 Hb_002073_190 0.1266598475 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
16 Hb_003943_050 0.1272578226 - - phosphoglucomutase, putative [Ricinus communis]
17 Hb_000329_060 0.1285823484 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
18 Hb_001040_100 0.1286935308 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
19 Hb_000963_040 0.1287212548 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
20 Hb_002309_010 0.1301425013 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_004096_050 Hb_004096_050 Hb_004319_080 Hb_004319_080 Hb_004096_050--Hb_004319_080 Hb_000302_310 Hb_000302_310 Hb_004096_050--Hb_000302_310 Hb_000579_070 Hb_000579_070 Hb_004096_050--Hb_000579_070 Hb_001205_250 Hb_001205_250 Hb_004096_050--Hb_001205_250 Hb_005618_050 Hb_005618_050 Hb_004096_050--Hb_005618_050 Hb_002681_090 Hb_002681_090 Hb_004096_050--Hb_002681_090 Hb_000035_470 Hb_000035_470 Hb_004319_080--Hb_000035_470 Hb_000329_800 Hb_000329_800 Hb_004319_080--Hb_000329_800 Hb_001301_150 Hb_001301_150 Hb_004319_080--Hb_001301_150 Hb_001040_100 Hb_001040_100 Hb_004319_080--Hb_001040_100 Hb_003883_060 Hb_003883_060 Hb_004319_080--Hb_003883_060 Hb_000640_170 Hb_000640_170 Hb_004319_080--Hb_000640_170 Hb_001214_060 Hb_001214_060 Hb_000302_310--Hb_001214_060 Hb_000302_310--Hb_002681_090 Hb_001860_030 Hb_001860_030 Hb_000302_310--Hb_001860_030 Hb_000302_310--Hb_000035_470 Hb_000302_310--Hb_004319_080 Hb_000163_220 Hb_000163_220 Hb_000302_310--Hb_000163_220 Hb_000056_160 Hb_000056_160 Hb_000579_070--Hb_000056_160 Hb_003687_210 Hb_003687_210 Hb_000579_070--Hb_003687_210 Hb_002749_080 Hb_002749_080 Hb_000579_070--Hb_002749_080 Hb_004586_150 Hb_004586_150 Hb_000579_070--Hb_004586_150 Hb_000261_210 Hb_000261_210 Hb_000579_070--Hb_000261_210 Hb_000787_060 Hb_000787_060 Hb_000579_070--Hb_000787_060 Hb_001584_140 Hb_001584_140 Hb_001205_250--Hb_001584_140 Hb_001188_060 Hb_001188_060 Hb_001205_250--Hb_001188_060 Hb_000637_150 Hb_000637_150 Hb_001205_250--Hb_000637_150 Hb_001188_070 Hb_001188_070 Hb_001205_250--Hb_001188_070 Hb_000915_260 Hb_000915_260 Hb_001205_250--Hb_000915_260 Hb_017700_010 Hb_017700_010 Hb_001205_250--Hb_017700_010 Hb_005588_090 Hb_005588_090 Hb_005618_050--Hb_005588_090 Hb_002110_230 Hb_002110_230 Hb_005618_050--Hb_002110_230 Hb_123915_040 Hb_123915_040 Hb_005618_050--Hb_123915_040 Hb_005618_050--Hb_000035_470 Hb_003375_070 Hb_003375_070 Hb_005618_050--Hb_003375_070 Hb_002073_190 Hb_002073_190 Hb_005618_050--Hb_002073_190 Hb_007657_020 Hb_007657_020 Hb_002681_090--Hb_007657_020 Hb_002311_290 Hb_002311_290 Hb_002681_090--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_002681_090--Hb_000603_030 Hb_000120_280 Hb_000120_280 Hb_002681_090--Hb_000120_280 Hb_002815_030 Hb_002815_030 Hb_002681_090--Hb_002815_030 Hb_000170_090 Hb_000170_090 Hb_002681_090--Hb_000170_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.17736 3.17658 10.7194 11.712 9.11892 8.56223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.9165 6.22653 2.52211 15.5438 7.16528

CAGE analysis