Hb_004096_100

Information

Type -
Description -
Location Contig4096: 106347-119097
Sequence    

Annotation

kegg
ID rcu:RCOM_0760860
description NADPH fad oxidoreductase, putative (EC:1.6.2.4)
nr
ID XP_012077956.1
description PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
swissprot
ID Q6NPS8
description NADPH-dependent diflavin oxidoreductase 1 OS=Arabidopsis thaliana GN=ATR3 PE=1 SV=1
trembl
ID A0A067KMA3
description NADPH-dependent diflavin oxidoreductase 1 OS=Jatropha curcas GN=JCGZ_12975 PE=3 SV=1
Gene Ontology
ID GO:0005737
description nadph-dependent diflavin oxidoreductase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40423: 106525-106896 , PASA_asmbl_40424: 106902-107075 , PASA_asmbl_40425: 107389-108507 , PASA_asmbl_40426: 109533-115711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_100 0.0 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
2 Hb_003966_030 0.0655812389 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
3 Hb_001488_410 0.0680529532 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
4 Hb_004102_140 0.0692755655 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010381_060 0.0720342034 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
6 Hb_003428_070 0.0722642143 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
7 Hb_174821_010 0.0728959502 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
8 Hb_000084_120 0.0741445842 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
9 Hb_003362_070 0.0743285533 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_001025_080 0.0748785438 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
11 Hb_000567_010 0.0752799366 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
12 Hb_010193_050 0.0761905404 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000347_130 0.0765492808 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
14 Hb_000470_070 0.0771134603 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
15 Hb_002551_070 0.0776632726 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
16 Hb_003464_020 0.07800874 - - srpk, putative [Ricinus communis]
17 Hb_016898_010 0.0785350605 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
18 Hb_005914_060 0.079133902 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
19 Hb_000173_510 0.0801103105 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
20 Hb_008159_020 0.0801194417 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_004096_100 Hb_004096_100 Hb_003966_030 Hb_003966_030 Hb_004096_100--Hb_003966_030 Hb_001488_410 Hb_001488_410 Hb_004096_100--Hb_001488_410 Hb_004102_140 Hb_004102_140 Hb_004096_100--Hb_004102_140 Hb_010381_060 Hb_010381_060 Hb_004096_100--Hb_010381_060 Hb_003428_070 Hb_003428_070 Hb_004096_100--Hb_003428_070 Hb_174821_010 Hb_174821_010 Hb_004096_100--Hb_174821_010 Hb_003362_070 Hb_003362_070 Hb_003966_030--Hb_003362_070 Hb_003966_030--Hb_004102_140 Hb_001617_060 Hb_001617_060 Hb_003966_030--Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_003966_030--Hb_000613_080 Hb_003044_020 Hb_003044_020 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_003464_020 Hb_003464_020 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_004102_140--Hb_001617_060 Hb_004102_140--Hb_003362_070 Hb_000820_170 Hb_000820_170 Hb_004102_140--Hb_000820_170 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_000470_070 Hb_000470_070 Hb_174821_010--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_174821_010--Hb_002078_100 Hb_000648_100 Hb_000648_100 Hb_174821_010--Hb_000648_100 Hb_174821_010--Hb_000613_080 Hb_174821_010--Hb_001617_060 Hb_174821_010--Hb_003966_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.93093 3.80206 3.07639 2.76889 6.08101 9.50377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67533 3.00129 2.79177 4.59291 3.17315

CAGE analysis