Hb_004096_110

Information

Type -
Description -
Location Contig4096: 121487-127549
Sequence    

Annotation

kegg
ID vvi:100264926
description T-complex protein 1 subunit gamma
nr
ID XP_012070504.1
description PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
swissprot
ID Q84WV1
description T-complex protein 1 subunit gamma OS=Arabidopsis thaliana GN=CCT3 PE=1 SV=1
trembl
ID A0A067L6R0
description T-complex protein 1 subunit gamma OS=Jatropha curcas GN=JCGZ_02769 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40429: 121465-127533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_110 0.0 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
2 Hb_021576_010 0.0452133677 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
3 Hb_003777_290 0.0629049436 - - polypyrimidine tract binding protein, putative [Ricinus communis]
4 Hb_000327_250 0.0660376411 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
5 Hb_000979_220 0.0707805928 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
6 Hb_011883_020 0.0734671952 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
7 Hb_001269_600 0.073905074 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_065500_020 0.075240168 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
9 Hb_016347_010 0.0773798968 - - protein transporter, putative [Ricinus communis]
10 Hb_001586_030 0.0776512612 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
11 Hb_000190_090 0.0782734878 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
12 Hb_001828_180 0.0782804627 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
13 Hb_001587_030 0.081793606 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
14 Hb_002686_200 0.084857422 - - glucosidase II beta subunit, putative [Ricinus communis]
15 Hb_005074_020 0.0858740648 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
16 Hb_004837_280 0.0863137107 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
17 Hb_000409_050 0.0870972145 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
18 Hb_008289_040 0.0871892959 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
19 Hb_001493_150 0.0873469658 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
20 Hb_016734_020 0.0874335165 - - sugar transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004096_110 Hb_004096_110 Hb_021576_010 Hb_021576_010 Hb_004096_110--Hb_021576_010 Hb_003777_290 Hb_003777_290 Hb_004096_110--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_004096_110--Hb_000327_250 Hb_000979_220 Hb_000979_220 Hb_004096_110--Hb_000979_220 Hb_011883_020 Hb_011883_020 Hb_004096_110--Hb_011883_020 Hb_001269_600 Hb_001269_600 Hb_004096_110--Hb_001269_600 Hb_021576_010--Hb_000979_220 Hb_021576_010--Hb_003777_290 Hb_021576_010--Hb_000327_250 Hb_016347_010 Hb_016347_010 Hb_021576_010--Hb_016347_010 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180 Hb_003777_290--Hb_000979_220 Hb_011224_160 Hb_011224_160 Hb_003777_290--Hb_011224_160 Hb_000363_190 Hb_000363_190 Hb_003777_290--Hb_000363_190 Hb_005489_040 Hb_005489_040 Hb_003777_290--Hb_005489_040 Hb_003544_030 Hb_003544_030 Hb_000327_250--Hb_003544_030 Hb_000327_250--Hb_016347_010 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_027506_010 Hb_027506_010 Hb_000979_220--Hb_027506_010 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_005074_020 Hb_005074_020 Hb_011883_020--Hb_005074_020 Hb_002631_210 Hb_002631_210 Hb_011883_020--Hb_002631_210 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_001691_200 Hb_001691_200 Hb_011883_020--Hb_001691_200 Hb_001703_050 Hb_001703_050 Hb_001269_600--Hb_001703_050 Hb_003159_050 Hb_003159_050 Hb_001269_600--Hb_003159_050 Hb_000409_050 Hb_000409_050 Hb_001269_600--Hb_000409_050 Hb_001269_600--Hb_001828_180 Hb_001269_600--Hb_000363_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.24924 18.3417 23.9983 27.3654 14.8078 13.8431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.54 14.8274 17.53 41.9126 24.3616

CAGE analysis