Hb_004096_180

Information

Type -
Description -
Location Contig4096: 170000-173429
Sequence    

Annotation

kegg
ID cmo:103495723
description 14-3-3-like protein
nr
ID XP_012077948.1
description PREDICTED: 14-3-3-like protein A [Jatropha curcas]
swissprot
ID P93259
description 14-3-3-like protein OS=Mesembryanthemum crystallinum GN=GBF PE=2 SV=1
trembl
ID A0A067KD35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12969 PE=3 SV=1
Gene Ontology
ID GO:0019904
description 14-3-3-like protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40433: 169862-173160 , PASA_asmbl_40434: 170366-173160
cDNA
(Sanger)
(ID:Location)		 015_G10.ab1: 170227-172429 , 025_O16.ab1: 170195-172439 , 041_P19.ab1: 169926-171423 , 048_E21r.ab1: 165985-169363

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_180 0.0 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
2 Hb_002872_030 0.0628046008 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
3 Hb_000087_060 0.0676338918 - - protein transporter, putative [Ricinus communis]
4 Hb_000096_120 0.0709521977 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
5 Hb_002028_210 0.0710007795 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
6 Hb_000359_040 0.071142789 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027428_010 0.0742233278 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
8 Hb_000879_180 0.0742308967 - - XPA-binding protein, putative [Ricinus communis]
9 Hb_000076_160 0.0748576388 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
10 Hb_164010_040 0.0769630692 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_001366_090 0.0780131258 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
12 Hb_003213_010 0.0785136453 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
13 Hb_006588_070 0.0788538787 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
14 Hb_000358_230 0.0797599281 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
15 Hb_000738_020 0.0811441162 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000339_040 0.0821305423 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
17 Hb_171900_090 0.0842491393 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000081_010 0.0845760724 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
19 Hb_000239_060 0.0849475897 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010381_090 0.0851186201 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004096_180 Hb_004096_180 Hb_002872_030 Hb_002872_030 Hb_004096_180--Hb_002872_030 Hb_000087_060 Hb_000087_060 Hb_004096_180--Hb_000087_060 Hb_000096_120 Hb_000096_120 Hb_004096_180--Hb_000096_120 Hb_002028_210 Hb_002028_210 Hb_004096_180--Hb_002028_210 Hb_000359_040 Hb_000359_040 Hb_004096_180--Hb_000359_040 Hb_027428_010 Hb_027428_010 Hb_004096_180--Hb_027428_010 Hb_002872_030--Hb_027428_010 Hb_010381_090 Hb_010381_090 Hb_002872_030--Hb_010381_090 Hb_008453_140 Hb_008453_140 Hb_002872_030--Hb_008453_140 Hb_007416_300 Hb_007416_300 Hb_002872_030--Hb_007416_300 Hb_006588_070 Hb_006588_070 Hb_002872_030--Hb_006588_070 Hb_073973_130 Hb_073973_130 Hb_002872_030--Hb_073973_130 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_002492_010 Hb_002492_010 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_000879_180 Hb_000879_180 Hb_000096_120--Hb_000879_180 Hb_000096_120--Hb_006588_070 Hb_000331_090 Hb_000331_090 Hb_000096_120--Hb_000331_090 Hb_000207_150 Hb_000207_150 Hb_000096_120--Hb_000207_150 Hb_000046_570 Hb_000046_570 Hb_000096_120--Hb_000046_570 Hb_024621_040 Hb_024621_040 Hb_002028_210--Hb_024621_040 Hb_001473_160 Hb_001473_160 Hb_002028_210--Hb_001473_160 Hb_093458_040 Hb_093458_040 Hb_002028_210--Hb_093458_040 Hb_001408_040 Hb_001408_040 Hb_002028_210--Hb_001408_040 Hb_005653_090 Hb_005653_090 Hb_002028_210--Hb_005653_090 Hb_002028_210--Hb_002492_010 Hb_004994_010 Hb_004994_010 Hb_000359_040--Hb_004994_010 Hb_001408_140 Hb_001408_140 Hb_000359_040--Hb_001408_140 Hb_001789_060 Hb_001789_060 Hb_000359_040--Hb_001789_060 Hb_001456_060 Hb_001456_060 Hb_000359_040--Hb_001456_060 Hb_002272_050 Hb_002272_050 Hb_000359_040--Hb_002272_050 Hb_000339_040 Hb_000339_040 Hb_000359_040--Hb_000339_040 Hb_027428_010--Hb_073973_130 Hb_005337_090 Hb_005337_090 Hb_027428_010--Hb_005337_090 Hb_027428_010--Hb_006588_070 Hb_000185_070 Hb_000185_070 Hb_027428_010--Hb_000185_070 Hb_027428_010--Hb_010381_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
262.034 335.962 409.636 324.892 209.935 278.604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
214.102 300.764 226.75 226.461 142.947

CAGE analysis