Hb_004096_220

Information

Type -
Description -
Location Contig4096: 215003-221030
Sequence    

Annotation

kegg
ID rcu:RCOM_1727120
description ubiquitin-protein ligase, putative
nr
ID XP_012077942.1
description PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
swissprot
ID Q96GN5
description Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2
trembl
ID A0A067KM95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12965 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40440: 214881-215065 , PASA_asmbl_40443: 218491-219279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_220 0.0 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
2 Hb_012033_010 0.0992473823 - - PREDICTED: histone H1.2-like [Jatropha curcas]
3 Hb_001307_200 0.1011259284 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
4 Hb_000261_310 0.1038342138 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
5 Hb_083078_010 0.1041940288 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
6 Hb_000438_010 0.1050994705 - - -
7 Hb_001268_300 0.1139654815 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007575_030 0.1180899057 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
9 Hb_000417_280 0.1204457927 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000256_160 0.12232447 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
11 Hb_073973_020 0.1236162237 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
12 Hb_001821_060 0.1262266737 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
13 Hb_153257_010 0.1276312987 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
14 Hb_000165_070 0.1284795548 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
15 Hb_009193_060 0.1286375594 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
16 Hb_000737_010 0.1319833029 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
17 Hb_000094_150 0.1326659007 - - -
18 Hb_002888_040 0.1350359279 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
19 Hb_003226_090 0.1361363257 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
20 Hb_000024_130 0.136314394 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004096_220 Hb_004096_220 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_000261_310 Hb_000261_310 Hb_004096_220--Hb_000261_310 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300 Hb_001821_060 Hb_001821_060 Hb_012033_010--Hb_001821_060 Hb_000256_160 Hb_000256_160 Hb_012033_010--Hb_000256_160 Hb_009193_010 Hb_009193_010 Hb_012033_010--Hb_009193_010 Hb_013968_010 Hb_013968_010 Hb_012033_010--Hb_013968_010 Hb_002888_040 Hb_002888_040 Hb_012033_010--Hb_002888_040 Hb_073973_020 Hb_073973_020 Hb_001307_200--Hb_073973_020 Hb_001307_200--Hb_001268_300 Hb_001307_200--Hb_002888_040 Hb_000221_180 Hb_000221_180 Hb_001307_200--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_001307_200--Hb_000417_410 Hb_000261_310--Hb_000256_160 Hb_000309_030 Hb_000309_030 Hb_000261_310--Hb_000309_030 Hb_000094_150 Hb_000094_150 Hb_000261_310--Hb_000094_150 Hb_000116_240 Hb_000116_240 Hb_000261_310--Hb_000116_240 Hb_007575_030 Hb_007575_030 Hb_000261_310--Hb_007575_030 Hb_007290_070 Hb_007290_070 Hb_083078_010--Hb_007290_070 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_000227_320 Hb_000227_320 Hb_083078_010--Hb_000227_320 Hb_001205_180 Hb_001205_180 Hb_083078_010--Hb_001205_180 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050 Hb_000737_010 Hb_000737_010 Hb_000438_010--Hb_000737_010 Hb_000318_170 Hb_000318_170 Hb_000438_010--Hb_000318_170 Hb_000438_010--Hb_007575_030 Hb_000438_010--Hb_000261_310 Hb_003106_110 Hb_003106_110 Hb_000438_010--Hb_003106_110 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_001268_300--Hb_073973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150039 1.36155 1.51185 1.05771 0.196075 0.178866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149519 0.168069 0.0319127 1.9783 1.45836

CAGE analysis