Hb_004097_020

Information

Type -
Description -
Location Contig4097: 38717-40407
Sequence    

Annotation

kegg
ID rcu:RCOM_1382160
description hypothetical protein
nr
ID XP_002522078.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7W2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40450: 38254-40433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004097_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000140_150 0.1723897701 - - -
3 Hb_002918_310 0.1777559587 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
4 Hb_001946_360 0.1778274892 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
5 Hb_006631_010 0.1796883942 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
6 Hb_000173_210 0.1853308433 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
7 Hb_000619_070 0.1862171669 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
8 Hb_000317_080 0.1870215119 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
9 Hb_001534_070 0.1902357686 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
10 Hb_002843_100 0.1907178464 - - -
11 Hb_002405_020 0.1927743457 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_000152_560 0.1933032993 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
13 Hb_002374_440 0.1946080697 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004650_080 0.1958317558 - - -
15 Hb_000392_280 0.1959862991 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
16 Hb_107039_010 0.1963626758 - - Quinone oxidoreductase-like protein, chloroplastic [Glycine soja]
17 Hb_000739_290 0.1970488725 - - cytochrome P450, putative [Ricinus communis]
18 Hb_012340_020 0.1974387212 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
19 Hb_005228_100 0.1982375174 - - -
20 Hb_000018_160 0.1983351863 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004097_020 Hb_004097_020 Hb_000140_150 Hb_000140_150 Hb_004097_020--Hb_000140_150 Hb_002918_310 Hb_002918_310 Hb_004097_020--Hb_002918_310 Hb_001946_360 Hb_001946_360 Hb_004097_020--Hb_001946_360 Hb_006631_010 Hb_006631_010 Hb_004097_020--Hb_006631_010 Hb_000173_210 Hb_000173_210 Hb_004097_020--Hb_000173_210 Hb_000619_070 Hb_000619_070 Hb_004097_020--Hb_000619_070 Hb_005057_010 Hb_005057_010 Hb_000140_150--Hb_005057_010 Hb_027556_010 Hb_027556_010 Hb_000140_150--Hb_027556_010 Hb_011716_040 Hb_011716_040 Hb_000140_150--Hb_011716_040 Hb_030414_050 Hb_030414_050 Hb_000140_150--Hb_030414_050 Hb_010368_070 Hb_010368_070 Hb_000140_150--Hb_010368_070 Hb_000926_270 Hb_000926_270 Hb_000140_150--Hb_000926_270 Hb_000720_070 Hb_000720_070 Hb_002918_310--Hb_000720_070 Hb_001534_070 Hb_001534_070 Hb_002918_310--Hb_001534_070 Hb_012340_020 Hb_012340_020 Hb_002918_310--Hb_012340_020 Hb_002965_030 Hb_002965_030 Hb_002918_310--Hb_002965_030 Hb_035947_010 Hb_035947_010 Hb_002918_310--Hb_035947_010 Hb_000152_560 Hb_000152_560 Hb_002918_310--Hb_000152_560 Hb_005228_120 Hb_005228_120 Hb_001946_360--Hb_005228_120 Hb_000317_080 Hb_000317_080 Hb_001946_360--Hb_000317_080 Hb_000395_140 Hb_000395_140 Hb_001946_360--Hb_000395_140 Hb_002311_250 Hb_002311_250 Hb_001946_360--Hb_002311_250 Hb_130177_010 Hb_130177_010 Hb_001946_360--Hb_130177_010 Hb_001341_040 Hb_001341_040 Hb_001946_360--Hb_001341_040 Hb_000544_120 Hb_000544_120 Hb_006631_010--Hb_000544_120 Hb_002897_040 Hb_002897_040 Hb_006631_010--Hb_002897_040 Hb_006631_010--Hb_000619_070 Hb_000016_280 Hb_000016_280 Hb_006631_010--Hb_000016_280 Hb_035360_010 Hb_035360_010 Hb_006631_010--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_006631_010--Hb_000608_340 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_000173_370 Hb_000173_370 Hb_000173_210--Hb_000173_370 Hb_000173_210--Hb_002897_040 Hb_000173_210--Hb_000619_070 Hb_000173_210--Hb_006631_010 Hb_000173_210--Hb_035360_010 Hb_000619_070--Hb_035360_010 Hb_000619_070--Hb_000608_340 Hb_000779_040 Hb_000779_040 Hb_000619_070--Hb_000779_040 Hb_003673_020 Hb_003673_020 Hb_000619_070--Hb_003673_020 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.629 21.222 1.70504 9.7099 94.8618 22.9714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6776 6.04539 11.5829 4.15606 0.42632

CAGE analysis