Hb_004097_030

Information

Type -
Description -
Location Contig4097: 45782-49268
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29610g
description POPTRDRAFT_550042; hypothetical protein
nr
ID XP_012072775.1
description PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06971 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40451: 45854-46805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004097_030 0.0 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
2 Hb_005914_100 0.0260896144 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004174_030 0.0372715971 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
4 Hb_002928_150 0.0518043571 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
5 Hb_003398_050 0.0556991185 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
6 Hb_056196_020 0.0604016025 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
7 Hb_003018_210 0.0610772889 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
8 Hb_001220_020 0.0680535493 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
9 Hb_007245_030 0.0712571526 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004032_390 0.0791861043 - - CDK, putative [Ricinus communis]
11 Hb_003776_050 0.0822563614 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
12 Hb_000614_200 0.0843447648 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
13 Hb_003368_070 0.0844170765 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
14 Hb_001699_070 0.0859071742 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001168_030 0.0879454149 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
16 Hb_000035_190 0.0919287991 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000084_230 0.0919800446 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
18 Hb_002837_120 0.092395027 - - PREDICTED: legumin A-like [Jatropha curcas]
19 Hb_012395_040 0.0926733127 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001279_110 0.0931561584 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_004097_030 Hb_004097_030 Hb_005914_100 Hb_005914_100 Hb_004097_030--Hb_005914_100 Hb_004174_030 Hb_004174_030 Hb_004097_030--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_004097_030--Hb_002928_150 Hb_003398_050 Hb_003398_050 Hb_004097_030--Hb_003398_050 Hb_056196_020 Hb_056196_020 Hb_004097_030--Hb_056196_020 Hb_003018_210 Hb_003018_210 Hb_004097_030--Hb_003018_210 Hb_005914_100--Hb_002928_150 Hb_005914_100--Hb_004174_030 Hb_007245_030 Hb_007245_030 Hb_005914_100--Hb_007245_030 Hb_005914_100--Hb_003398_050 Hb_005914_100--Hb_056196_020 Hb_004174_030--Hb_003018_210 Hb_001220_020 Hb_001220_020 Hb_004174_030--Hb_001220_020 Hb_004174_030--Hb_003398_050 Hb_004174_030--Hb_002928_150 Hb_002928_150--Hb_003398_050 Hb_003776_050 Hb_003776_050 Hb_002928_150--Hb_003776_050 Hb_002928_150--Hb_001220_020 Hb_003398_050--Hb_001220_020 Hb_003398_050--Hb_003776_050 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_002837_120 Hb_002837_120 Hb_056196_020--Hb_002837_120 Hb_056196_020--Hb_004174_030 Hb_001969_030 Hb_001969_030 Hb_056196_020--Hb_001969_030 Hb_056196_020--Hb_003018_210 Hb_000035_190 Hb_000035_190 Hb_003018_210--Hb_000035_190 Hb_001699_070 Hb_001699_070 Hb_003018_210--Hb_001699_070 Hb_003018_210--Hb_003398_050 Hb_003018_210--Hb_001220_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0145217 0.125712 12.846 4.87644 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.375615 0.358721

CAGE analysis