Hb_004097_060

Information

Type -
Description -
Location Contig4097: 78531-79277
Sequence    

Annotation

kegg
ID rcu:RCOM_1382350
description hypothetical protein
nr
ID XP_002522087.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7X1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004097_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000634_040 0.253081618 - - PREDICTED: beta-amylase 3, chloroplastic [Jatropha curcas]
3 Hb_000066_100 0.254896031 - - PREDICTED: uncharacterized protein LOC105648357 [Jatropha curcas]
4 Hb_001251_080 0.2587011807 - - -
5 Hb_031718_010 0.2646588223 - - -
6 Hb_002221_040 0.2748789377 - - PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
7 Hb_006738_020 0.275093666 - - hypothetical protein VITISV_010510 [Vitis vinifera]
8 Hb_001923_010 0.2791291804 - - PREDICTED: outer envelope protein 80, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_004306_050 0.28016918 - - unnamed protein product [Vitis vinifera]
10 Hb_012022_170 0.2816798948 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
11 Hb_002243_070 0.2820857077 - - sodium-bile acid cotransporter, putative [Ricinus communis]
12 Hb_012132_060 0.286054408 - - PREDICTED: centromere protein V [Jatropha curcas]
13 Hb_000933_160 0.2874420665 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
14 Hb_003688_070 0.2891678083 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
15 Hb_000399_010 0.2896085381 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
16 Hb_002249_100 0.2902915024 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
17 Hb_009005_050 0.2910505402 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
18 Hb_042202_050 0.2911456244 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
19 Hb_027380_180 0.2912172378 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
20 Hb_003294_100 0.2916706554 - - hypothetical protein VITISV_009629 [Vitis vinifera]

Gene co-expression network

sample Hb_004097_060 Hb_004097_060 Hb_000634_040 Hb_000634_040 Hb_004097_060--Hb_000634_040 Hb_000066_100 Hb_000066_100 Hb_004097_060--Hb_000066_100 Hb_001251_080 Hb_001251_080 Hb_004097_060--Hb_001251_080 Hb_031718_010 Hb_031718_010 Hb_004097_060--Hb_031718_010 Hb_002221_040 Hb_002221_040 Hb_004097_060--Hb_002221_040 Hb_006738_020 Hb_006738_020 Hb_004097_060--Hb_006738_020 Hb_000398_040 Hb_000398_040 Hb_000634_040--Hb_000398_040 Hb_001775_110 Hb_001775_110 Hb_000634_040--Hb_001775_110 Hb_000933_160 Hb_000933_160 Hb_000634_040--Hb_000933_160 Hb_001923_010 Hb_001923_010 Hb_000634_040--Hb_001923_010 Hb_027380_180 Hb_027380_180 Hb_000634_040--Hb_027380_180 Hb_009113_070 Hb_009113_070 Hb_000634_040--Hb_009113_070 Hb_003633_060 Hb_003633_060 Hb_000066_100--Hb_003633_060 Hb_000066_100--Hb_000933_160 Hb_002798_020 Hb_002798_020 Hb_000066_100--Hb_002798_020 Hb_000676_160 Hb_000676_160 Hb_000066_100--Hb_000676_160 Hb_000265_050 Hb_000265_050 Hb_000066_100--Hb_000265_050 Hb_001373_060 Hb_001373_060 Hb_000066_100--Hb_001373_060 Hb_019253_030 Hb_019253_030 Hb_001251_080--Hb_019253_030 Hb_000574_160 Hb_000574_160 Hb_001251_080--Hb_000574_160 Hb_001019_040 Hb_001019_040 Hb_001251_080--Hb_001019_040 Hb_001246_060 Hb_001246_060 Hb_001251_080--Hb_001246_060 Hb_001287_030 Hb_001287_030 Hb_001251_080--Hb_001287_030 Hb_000979_200 Hb_000979_200 Hb_001251_080--Hb_000979_200 Hb_011644_030 Hb_011644_030 Hb_031718_010--Hb_011644_030 Hb_004567_120 Hb_004567_120 Hb_031718_010--Hb_004567_120 Hb_003327_050 Hb_003327_050 Hb_031718_010--Hb_003327_050 Hb_003623_050 Hb_003623_050 Hb_031718_010--Hb_003623_050 Hb_001484_010 Hb_001484_010 Hb_031718_010--Hb_001484_010 Hb_026048_070 Hb_026048_070 Hb_031718_010--Hb_026048_070 Hb_127552_030 Hb_127552_030 Hb_002221_040--Hb_127552_030 Hb_032258_030 Hb_032258_030 Hb_002221_040--Hb_032258_030 Hb_105123_010 Hb_105123_010 Hb_002221_040--Hb_105123_010 Hb_002221_040--Hb_000398_040 Hb_103118_010 Hb_103118_010 Hb_002221_040--Hb_103118_010 Hb_155159_030 Hb_155159_030 Hb_002221_040--Hb_155159_030 Hb_002872_050 Hb_002872_050 Hb_006738_020--Hb_002872_050 Hb_000056_070 Hb_000056_070 Hb_006738_020--Hb_000056_070 Hb_000072_200 Hb_000072_200 Hb_006738_020--Hb_000072_200 Hb_003050_280 Hb_003050_280 Hb_006738_020--Hb_003050_280 Hb_000457_290 Hb_000457_290 Hb_006738_020--Hb_000457_290 Hb_000208_180 Hb_000208_180 Hb_006738_020--Hb_000208_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.146304 0 0.183487 0 0.221829 0.554367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172644 1.62725 0.887738 0.401452 0.976762

CAGE analysis