Hb_004097_080

Information

Type -
Description -
Location Contig4097: 84479-87112
Sequence    

Annotation

kegg
ID mtr:MTR_4g018970
description Receptor-like protein kinase
nr
ID XP_009618938.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
swissprot
ID Q9FL28
description LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1
trembl
ID G7JR90
description Leucine-rich receptor-like kinase family protein OS=Medicago truncatula GN=MTR_4g018970 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004097_080 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
2 Hb_058620_010 0.0710895696 - - cytochrome P450, putative [Ricinus communis]
3 Hb_135392_010 0.0788438204 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
4 Hb_000712_070 0.0795862843 - - conserved hypothetical protein [Ricinus communis]
5 Hb_039562_010 0.0807507447 - - PREDICTED: protein SRG1-like [Jatropha curcas]
6 Hb_003334_080 0.0822613407 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_001134_040 0.0824530245 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
8 Hb_002835_020 0.0861389737 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
9 Hb_000229_080 0.0878493186 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
10 Hb_004693_010 0.0885956469 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
11 Hb_000141_070 0.0898867994 - - l-lactate dehydrogenase, putative [Ricinus communis]
12 Hb_000388_160 0.0900313443 - - xyloglucan endo-1 family protein [Populus trichocarpa]
13 Hb_003090_070 0.0919665373 - - PREDICTED: laccase-7 [Jatropha curcas]
14 Hb_058620_040 0.0925574342 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
15 Hb_002805_230 0.0929937256 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
16 Hb_039363_010 0.093565263 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
17 Hb_003073_020 0.0937820215 - - protein binding protein, putative [Ricinus communis]
18 Hb_000500_190 0.0952372164 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
19 Hb_004204_160 0.0984450647 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
20 Hb_002553_170 0.0998157381 - - PREDICTED: early nodulin-75-like [Jatropha curcas]

Gene co-expression network

sample Hb_004097_080 Hb_004097_080 Hb_058620_010 Hb_058620_010 Hb_004097_080--Hb_058620_010 Hb_135392_010 Hb_135392_010 Hb_004097_080--Hb_135392_010 Hb_000712_070 Hb_000712_070 Hb_004097_080--Hb_000712_070 Hb_039562_010 Hb_039562_010 Hb_004097_080--Hb_039562_010 Hb_003334_080 Hb_003334_080 Hb_004097_080--Hb_003334_080 Hb_001134_040 Hb_001134_040 Hb_004097_080--Hb_001134_040 Hb_058620_010--Hb_001134_040 Hb_058620_010--Hb_000712_070 Hb_002805_230 Hb_002805_230 Hb_058620_010--Hb_002805_230 Hb_058620_010--Hb_135392_010 Hb_003090_070 Hb_003090_070 Hb_058620_010--Hb_003090_070 Hb_007417_020 Hb_007417_020 Hb_135392_010--Hb_007417_020 Hb_007491_010 Hb_007491_010 Hb_135392_010--Hb_007491_010 Hb_135392_010--Hb_001134_040 Hb_001464_010 Hb_001464_010 Hb_135392_010--Hb_001464_010 Hb_000712_070--Hb_002805_230 Hb_000712_070--Hb_003090_070 Hb_000141_070 Hb_000141_070 Hb_000712_070--Hb_000141_070 Hb_000712_070--Hb_003334_080 Hb_004693_010 Hb_004693_010 Hb_000712_070--Hb_004693_010 Hb_007483_040 Hb_007483_040 Hb_000712_070--Hb_007483_040 Hb_000318_440 Hb_000318_440 Hb_039562_010--Hb_000318_440 Hb_003968_020 Hb_003968_020 Hb_039562_010--Hb_003968_020 Hb_039562_010--Hb_004693_010 Hb_039562_010--Hb_135392_010 Hb_002173_080 Hb_002173_080 Hb_039562_010--Hb_002173_080 Hb_003334_080--Hb_000141_070 Hb_058620_040 Hb_058620_040 Hb_003334_080--Hb_058620_040 Hb_009568_010 Hb_009568_010 Hb_003334_080--Hb_009568_010 Hb_002835_020 Hb_002835_020 Hb_003334_080--Hb_002835_020 Hb_002553_170 Hb_002553_170 Hb_003334_080--Hb_002553_170 Hb_058620_050 Hb_058620_050 Hb_003334_080--Hb_058620_050 Hb_001134_040--Hb_002805_230 Hb_001134_040--Hb_003090_070 Hb_001134_040--Hb_000712_070 Hb_001134_040--Hb_007417_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00910986 0.0351903 0.0218005 0.0260786 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.70547 0.0279601

CAGE analysis