Hb_004097_120

Information

Type -
Description -
Location Contig4097: 148473-151457
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015427mg
description hypothetical protein
nr
ID XP_012086191.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40456: 148462-150054 , PASA_asmbl_40458: 151118-152134 , PASA_asmbl_40459: 152188-153315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004097_120 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_001882_130 0.1263825065 transcription factor TF Family: mTERF hypothetical protein VITISV_028996 [Vitis vinifera]
3 Hb_001008_170 0.1436662955 transcription factor TF Family: mTERF RNA binding protein, putative [Ricinus communis]
4 Hb_000661_110 0.1479853067 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
5 Hb_006185_060 0.1486469395 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
6 Hb_000479_150 0.1500652196 - - glycosyl transferase family 8 family protein [Populus trichocarpa]
7 Hb_001221_140 0.15035539 - - DNA binding protein, putative [Ricinus communis]
8 Hb_007904_030 0.1514220724 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
9 Hb_005408_060 0.1516999951 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
10 Hb_002478_030 0.1525392559 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
11 Hb_147505_010 0.1530391569 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
12 Hb_001269_210 0.1555565697 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
13 Hb_009367_080 0.1572288496 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
14 Hb_001638_300 0.15915519 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
15 Hb_003939_040 0.1621262177 - - hypothetical protein CICLE_v10014350mg [Citrus clementina]
16 Hb_002081_010 0.1627894216 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000028_510 0.1633457817 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
18 Hb_000120_660 0.1666200931 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
19 Hb_000357_120 0.1694706594 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
20 Hb_003430_060 0.1709721318 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]

Gene co-expression network

sample Hb_004097_120 Hb_004097_120 Hb_001882_130 Hb_001882_130 Hb_004097_120--Hb_001882_130 Hb_001008_170 Hb_001008_170 Hb_004097_120--Hb_001008_170 Hb_000661_110 Hb_000661_110 Hb_004097_120--Hb_000661_110 Hb_006185_060 Hb_006185_060 Hb_004097_120--Hb_006185_060 Hb_000479_150 Hb_000479_150 Hb_004097_120--Hb_000479_150 Hb_001221_140 Hb_001221_140 Hb_004097_120--Hb_001221_140 Hb_002478_030 Hb_002478_030 Hb_001882_130--Hb_002478_030 Hb_003939_040 Hb_003939_040 Hb_001882_130--Hb_003939_040 Hb_028472_010 Hb_028472_010 Hb_001882_130--Hb_028472_010 Hb_000635_200 Hb_000635_200 Hb_001882_130--Hb_000635_200 Hb_001882_130--Hb_001221_140 Hb_000739_180 Hb_000739_180 Hb_001008_170--Hb_000739_180 Hb_001008_170--Hb_002478_030 Hb_003894_120 Hb_003894_120 Hb_001008_170--Hb_003894_120 Hb_030827_020 Hb_030827_020 Hb_001008_170--Hb_030827_020 Hb_001257_030 Hb_001257_030 Hb_001008_170--Hb_001257_030 Hb_004449_130 Hb_004449_130 Hb_001008_170--Hb_004449_130 Hb_000050_190 Hb_000050_190 Hb_000661_110--Hb_000050_190 Hb_132840_110 Hb_132840_110 Hb_000661_110--Hb_132840_110 Hb_002876_320 Hb_002876_320 Hb_000661_110--Hb_002876_320 Hb_001021_220 Hb_001021_220 Hb_000661_110--Hb_001021_220 Hb_001268_280 Hb_001268_280 Hb_000661_110--Hb_001268_280 Hb_002081_010 Hb_002081_010 Hb_000661_110--Hb_002081_010 Hb_011161_020 Hb_011161_020 Hb_006185_060--Hb_011161_020 Hb_000120_660 Hb_000120_660 Hb_006185_060--Hb_000120_660 Hb_000122_220 Hb_000122_220 Hb_006185_060--Hb_000122_220 Hb_000574_420 Hb_000574_420 Hb_006185_060--Hb_000574_420 Hb_002329_020 Hb_002329_020 Hb_006185_060--Hb_002329_020 Hb_000479_070 Hb_000479_070 Hb_006185_060--Hb_000479_070 Hb_000479_150--Hb_030827_020 Hb_004357_020 Hb_004357_020 Hb_000479_150--Hb_004357_020 Hb_000334_220 Hb_000334_220 Hb_000479_150--Hb_000334_220 Hb_002267_140 Hb_002267_140 Hb_000479_150--Hb_002267_140 Hb_138596_010 Hb_138596_010 Hb_000479_150--Hb_138596_010 Hb_002843_120 Hb_002843_120 Hb_000479_150--Hb_002843_120 Hb_001221_140--Hb_003939_040 Hb_007380_140 Hb_007380_140 Hb_001221_140--Hb_007380_140 Hb_000077_220 Hb_000077_220 Hb_001221_140--Hb_000077_220 Hb_178968_050 Hb_178968_050 Hb_001221_140--Hb_178968_050 Hb_008247_020 Hb_008247_020 Hb_001221_140--Hb_008247_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.37131 7.26454 4.95422 6.42436 4.30471 6.37816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.836847 0.685765 7.95728 2.93847 4.80011

CAGE analysis