Hb_004098_030

Information

Type -
Description -
Location Contig4098: 20324-21319
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID XP_002523474.1
description TMV resistance protein N, putative [Ricinus communis]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID B9SBV5
description TMV resistance protein N, putative OS=Ricinus communis GN=RCOM_1045150 PE=4 SV=1
Gene Ontology
ID GO:0000166
description tmv resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004098_030 0.0 - - TMV resistance protein N, putative [Ricinus communis]
2 Hb_070820_010 0.1930228096 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
3 Hb_002821_010 0.2036038863 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
4 Hb_162999_010 0.2096877068 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_086859_010 0.2224036796 - - -
6 Hb_001488_110 0.2254911746 - - -
7 Hb_042404_010 0.2290429782 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
8 Hb_002153_010 0.2308243389 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
9 Hb_000046_020 0.2319052002 - - -
10 Hb_001741_050 0.2357574888 - - -
11 Hb_174107_010 0.2366147944 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
12 Hb_114839_010 0.2412868868 - - -
13 Hb_048197_010 0.2520526592 - - -
14 Hb_002904_090 0.2531705925 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
15 Hb_120221_010 0.2537065834 - - -
16 Hb_000086_330 0.2546040111 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
17 Hb_029982_010 0.2554810391 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
18 Hb_000048_090 0.2576273969 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
19 Hb_000931_030 0.258211214 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
20 Hb_002205_200 0.2588304124 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]

Gene co-expression network

sample Hb_004098_030 Hb_004098_030 Hb_070820_010 Hb_070820_010 Hb_004098_030--Hb_070820_010 Hb_002821_010 Hb_002821_010 Hb_004098_030--Hb_002821_010 Hb_162999_010 Hb_162999_010 Hb_004098_030--Hb_162999_010 Hb_086859_010 Hb_086859_010 Hb_004098_030--Hb_086859_010 Hb_001488_110 Hb_001488_110 Hb_004098_030--Hb_001488_110 Hb_042404_010 Hb_042404_010 Hb_004098_030--Hb_042404_010 Hb_000086_330 Hb_000086_330 Hb_070820_010--Hb_000086_330 Hb_070820_010--Hb_002821_010 Hb_070820_010--Hb_042404_010 Hb_003398_060 Hb_003398_060 Hb_070820_010--Hb_003398_060 Hb_048197_010 Hb_048197_010 Hb_070820_010--Hb_048197_010 Hb_120221_010 Hb_120221_010 Hb_002821_010--Hb_120221_010 Hb_000381_080 Hb_000381_080 Hb_002821_010--Hb_000381_080 Hb_084934_010 Hb_084934_010 Hb_002821_010--Hb_084934_010 Hb_027472_090 Hb_027472_090 Hb_002821_010--Hb_027472_090 Hb_170305_020 Hb_170305_020 Hb_002821_010--Hb_170305_020 Hb_000366_100 Hb_000366_100 Hb_002821_010--Hb_000366_100 Hb_000048_090 Hb_000048_090 Hb_162999_010--Hb_000048_090 Hb_002153_010 Hb_002153_010 Hb_162999_010--Hb_002153_010 Hb_126398_010 Hb_126398_010 Hb_162999_010--Hb_126398_010 Hb_162999_010--Hb_001488_110 Hb_174107_010 Hb_174107_010 Hb_162999_010--Hb_174107_010 Hb_002188_100 Hb_002188_100 Hb_162999_010--Hb_002188_100 Hb_029982_010 Hb_029982_010 Hb_086859_010--Hb_029982_010 Hb_011161_070 Hb_011161_070 Hb_086859_010--Hb_011161_070 Hb_142522_010 Hb_142522_010 Hb_086859_010--Hb_142522_010 Hb_086859_010--Hb_042404_010 Hb_000221_100 Hb_000221_100 Hb_086859_010--Hb_000221_100 Hb_000329_530 Hb_000329_530 Hb_086859_010--Hb_000329_530 Hb_077562_040 Hb_077562_040 Hb_001488_110--Hb_077562_040 Hb_027445_060 Hb_027445_060 Hb_001488_110--Hb_027445_060 Hb_000184_120 Hb_000184_120 Hb_001488_110--Hb_000184_120 Hb_068946_010 Hb_068946_010 Hb_001488_110--Hb_068946_010 Hb_004025_030 Hb_004025_030 Hb_001488_110--Hb_004025_030 Hb_000563_530 Hb_000563_530 Hb_001488_110--Hb_000563_530 Hb_000445_330 Hb_000445_330 Hb_042404_010--Hb_000445_330 Hb_042404_010--Hb_029982_010 Hb_136765_010 Hb_136765_010 Hb_042404_010--Hb_136765_010 Hb_000331_500 Hb_000331_500 Hb_042404_010--Hb_000331_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0822184 0.0347963 0 0 0.0413564 0.176803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0953031 0.0749058 0 0 0

CAGE analysis