Hb_004100_050

Information

Type -
Description -
Location Contig4100: 57638-64272
Sequence    

Annotation

kegg
ID rcu:RCOM_1487760
description mitochondrial processing peptidase alpha subunit, putative (EC:3.4.24.64)
nr
ID XP_012069060.1
description PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
swissprot
ID P29677
description Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1
trembl
ID A0A067L0U6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24842 PE=3 SV=1
Gene Ontology
ID GO:0004222
description mitochondrial-processing peptidase subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40517: 60238-60782 , PASA_asmbl_40518: 57667-64221 , PASA_asmbl_40519: 59962-63661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004100_050 0.0 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
2 Hb_000880_070 0.0765548446 - - gamma-tubulin complex component, putative [Ricinus communis]
3 Hb_001703_040 0.0772691784 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
4 Hb_002716_060 0.0777364858 - - carboxylesterase np, putative [Ricinus communis]
5 Hb_001025_120 0.0777569602 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
6 Hb_089839_010 0.0894060953 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
7 Hb_000260_460 0.0901255297 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
8 Hb_000579_080 0.0917822555 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
9 Hb_002055_020 0.0917949645 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
10 Hb_000254_100 0.0921553659 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
11 Hb_000120_890 0.0930934773 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
12 Hb_003363_070 0.0939861615 - - -
13 Hb_008304_020 0.0955458831 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
14 Hb_012633_050 0.0965869332 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000739_240 0.096808006 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
16 Hb_000476_060 0.0971924762 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
17 Hb_000025_350 0.0975491412 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
18 Hb_004339_040 0.0977020877 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
19 Hb_018790_020 0.098917377 - - protein kinase, putative [Ricinus communis]
20 Hb_000975_210 0.0989574677 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]

Gene co-expression network

sample Hb_004100_050 Hb_004100_050 Hb_000880_070 Hb_000880_070 Hb_004100_050--Hb_000880_070 Hb_001703_040 Hb_001703_040 Hb_004100_050--Hb_001703_040 Hb_002716_060 Hb_002716_060 Hb_004100_050--Hb_002716_060 Hb_001025_120 Hb_001025_120 Hb_004100_050--Hb_001025_120 Hb_089839_010 Hb_089839_010 Hb_004100_050--Hb_089839_010 Hb_000260_460 Hb_000260_460 Hb_004100_050--Hb_000260_460 Hb_000321_140 Hb_000321_140 Hb_000880_070--Hb_000321_140 Hb_004339_040 Hb_004339_040 Hb_000880_070--Hb_004339_040 Hb_002055_020 Hb_002055_020 Hb_000880_070--Hb_002055_020 Hb_000254_100 Hb_000254_100 Hb_000880_070--Hb_000254_100 Hb_001824_080 Hb_001824_080 Hb_000880_070--Hb_001824_080 Hb_000788_030 Hb_000788_030 Hb_001703_040--Hb_000788_030 Hb_012438_030 Hb_012438_030 Hb_001703_040--Hb_012438_030 Hb_002631_240 Hb_002631_240 Hb_001703_040--Hb_002631_240 Hb_087313_010 Hb_087313_010 Hb_001703_040--Hb_087313_010 Hb_001504_010 Hb_001504_010 Hb_001703_040--Hb_001504_010 Hb_000120_890 Hb_000120_890 Hb_001703_040--Hb_000120_890 Hb_002716_060--Hb_001025_120 Hb_018790_020 Hb_018790_020 Hb_002716_060--Hb_018790_020 Hb_000476_060 Hb_000476_060 Hb_002716_060--Hb_000476_060 Hb_004109_320 Hb_004109_320 Hb_002716_060--Hb_004109_320 Hb_043792_010 Hb_043792_010 Hb_002716_060--Hb_043792_010 Hb_000282_090 Hb_000282_090 Hb_002716_060--Hb_000282_090 Hb_001025_120--Hb_018790_020 Hb_000676_070 Hb_000676_070 Hb_001025_120--Hb_000676_070 Hb_007894_150 Hb_007894_150 Hb_001025_120--Hb_007894_150 Hb_004807_020 Hb_004807_020 Hb_001025_120--Hb_004807_020 Hb_000028_520 Hb_000028_520 Hb_001025_120--Hb_000028_520 Hb_089839_010--Hb_000476_060 Hb_003498_100 Hb_003498_100 Hb_089839_010--Hb_003498_100 Hb_000703_190 Hb_000703_190 Hb_089839_010--Hb_000703_190 Hb_089839_010--Hb_018790_020 Hb_000089_210 Hb_000089_210 Hb_089839_010--Hb_000089_210 Hb_003098_070 Hb_003098_070 Hb_089839_010--Hb_003098_070 Hb_000260_460--Hb_000703_190 Hb_000101_080 Hb_000101_080 Hb_000260_460--Hb_000101_080 Hb_000260_460--Hb_000028_520 Hb_000078_140 Hb_000078_140 Hb_000260_460--Hb_000078_140 Hb_000317_040 Hb_000317_040 Hb_000260_460--Hb_000317_040 Hb_000260_460--Hb_001703_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.57438 9.27924 23.1568 11.0327 9.1767 5.33233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.85055 9.85945 11.5946 13.7072 15.1253

CAGE analysis