Hb_004100_080

Information

Type -
Description -
Location Contig4100: 66896-71992
Sequence    

Annotation

kegg
ID rcu:RCOM_1488100
description hypothetical protein
nr
ID XP_002515951.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQD2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1488100 PE=4 SV=1
Gene Ontology
ID GO:0006359
description dna-directed rna polymerase iii subunit rpc31-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40520: 69873-71200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004100_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_023386_020 0.0437132771 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
3 Hb_000856_110 0.0500155842 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
4 Hb_000160_210 0.0666188568 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004841_010 0.0680055813 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
6 Hb_007657_010 0.0699546082 - - ATP binding protein, putative [Ricinus communis]
7 Hb_004412_010 0.0715201914 - - -
8 Hb_000029_050 0.0717492752 - - expressed protein, putative [Ricinus communis]
9 Hb_000926_190 0.0726481225 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
10 Hb_002518_280 0.0735707834 - - phosphate transporter [Manihot esculenta]
11 Hb_165928_020 0.0748603741 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
12 Hb_156973_010 0.0774149339 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004963_030 0.0802145577 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_008785_040 0.0806134961 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
15 Hb_006915_070 0.0807920563 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
16 Hb_007007_060 0.0808267319 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
17 Hb_002154_100 0.0810352216 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
18 Hb_000165_250 0.0816018847 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
19 Hb_013607_030 0.0818045102 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
20 Hb_003018_130 0.0826315608 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]

Gene co-expression network

sample Hb_004100_080 Hb_004100_080 Hb_023386_020 Hb_023386_020 Hb_004100_080--Hb_023386_020 Hb_000856_110 Hb_000856_110 Hb_004100_080--Hb_000856_110 Hb_000160_210 Hb_000160_210 Hb_004100_080--Hb_000160_210 Hb_004841_010 Hb_004841_010 Hb_004100_080--Hb_004841_010 Hb_007657_010 Hb_007657_010 Hb_004100_080--Hb_007657_010 Hb_004412_010 Hb_004412_010 Hb_004100_080--Hb_004412_010 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200 Hb_000856_110--Hb_023386_020 Hb_000856_110--Hb_004841_010 Hb_000856_110--Hb_004412_010 Hb_006915_070 Hb_006915_070 Hb_000856_110--Hb_006915_070 Hb_000165_250 Hb_000165_250 Hb_000856_110--Hb_000165_250 Hb_007007_060 Hb_007007_060 Hb_000160_210--Hb_007007_060 Hb_003794_010 Hb_003794_010 Hb_000160_210--Hb_003794_010 Hb_000160_210--Hb_023386_020 Hb_000009_090 Hb_000009_090 Hb_000160_210--Hb_000009_090 Hb_079526_030 Hb_079526_030 Hb_000160_210--Hb_079526_030 Hb_165928_020 Hb_165928_020 Hb_004841_010--Hb_165928_020 Hb_004841_010--Hb_023386_020 Hb_008643_210 Hb_008643_210 Hb_004841_010--Hb_008643_210 Hb_016172_020 Hb_016172_020 Hb_004841_010--Hb_016172_020 Hb_001902_030 Hb_001902_030 Hb_007657_010--Hb_001902_030 Hb_008221_180 Hb_008221_180 Hb_007657_010--Hb_008221_180 Hb_000346_060 Hb_000346_060 Hb_007657_010--Hb_000346_060 Hb_002263_020 Hb_002263_020 Hb_007657_010--Hb_002263_020 Hb_000343_250 Hb_000343_250 Hb_007657_010--Hb_000343_250 Hb_004097_070 Hb_004097_070 Hb_007657_010--Hb_004097_070 Hb_007575_050 Hb_007575_050 Hb_004412_010--Hb_007575_050 Hb_004412_010--Hb_023386_020 Hb_003878_070 Hb_003878_070 Hb_004412_010--Hb_003878_070 Hb_004412_010--Hb_165928_020 Hb_016898_010 Hb_016898_010 Hb_004412_010--Hb_016898_010 Hb_023386_040 Hb_023386_040 Hb_004412_010--Hb_023386_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.282 6.7189 7.01769 4.92325 11.5676 10.9801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01873 9.94633 6.52977 6.54156 9.41169

CAGE analysis