Hb_004102_010

Information

Type -
Description -
Location Contig4102: 624-1082
Sequence    

Annotation

kegg
ID tcc:TCM_029004
description F-box family protein
nr
ID XP_007024446.1
description F-box family protein [Theobroma cacao]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID A0A061GCB7
description F-box family protein OS=Theobroma cacao GN=TCM_029004 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_010 0.0 - - F-box family protein [Theobroma cacao]
2 Hb_003197_010 0.1942115707 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000365_370 0.2128751259 - - conserved hypothetical protein [Ricinus communis]
4 Hb_017358_070 0.2340562795 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
5 Hb_000834_070 0.2349890195 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
6 Hb_000389_050 0.237005142 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
7 Hb_000107_510 0.2457048022 - - phosphate transporter [Manihot esculenta]
8 Hb_007558_130 0.2504679435 - - -
9 Hb_000723_290 0.2576312132 - - calcium lipid binding protein, putative [Ricinus communis]
10 Hb_002150_070 0.2607387351 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
11 Hb_000465_320 0.2656148258 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
12 Hb_000477_040 0.2686525884 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004024_020 0.2766919923 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_001307_110 0.277630855 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
15 Hb_031527_110 0.2781183176 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
16 Hb_000445_120 0.2784727314 - - ATP binding protein, putative [Ricinus communis]
17 Hb_183963_010 0.2809358621 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
18 Hb_003453_050 0.2822496327 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
19 Hb_007110_010 0.2835933077 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
20 Hb_005687_080 0.2840579152 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004102_010 Hb_004102_010 Hb_003197_010 Hb_003197_010 Hb_004102_010--Hb_003197_010 Hb_000365_370 Hb_000365_370 Hb_004102_010--Hb_000365_370 Hb_017358_070 Hb_017358_070 Hb_004102_010--Hb_017358_070 Hb_000834_070 Hb_000834_070 Hb_004102_010--Hb_000834_070 Hb_000389_050 Hb_000389_050 Hb_004102_010--Hb_000389_050 Hb_000107_510 Hb_000107_510 Hb_004102_010--Hb_000107_510 Hb_000077_360 Hb_000077_360 Hb_003197_010--Hb_000077_360 Hb_001488_190 Hb_001488_190 Hb_003197_010--Hb_001488_190 Hb_003197_010--Hb_017358_070 Hb_000477_040 Hb_000477_040 Hb_003197_010--Hb_000477_040 Hb_000445_120 Hb_000445_120 Hb_003197_010--Hb_000445_120 Hb_000723_290 Hb_000723_290 Hb_000365_370--Hb_000723_290 Hb_003453_050 Hb_003453_050 Hb_000365_370--Hb_003453_050 Hb_000167_050 Hb_000167_050 Hb_000365_370--Hb_000167_050 Hb_000365_370--Hb_000107_510 Hb_010577_040 Hb_010577_040 Hb_000365_370--Hb_010577_040 Hb_004128_070 Hb_004128_070 Hb_000365_370--Hb_004128_070 Hb_047418_010 Hb_047418_010 Hb_017358_070--Hb_047418_010 Hb_005563_010 Hb_005563_010 Hb_017358_070--Hb_005563_010 Hb_005144_120 Hb_005144_120 Hb_017358_070--Hb_005144_120 Hb_000328_010 Hb_000328_010 Hb_017358_070--Hb_000328_010 Hb_004236_040 Hb_004236_040 Hb_017358_070--Hb_004236_040 Hb_001300_250 Hb_001300_250 Hb_000834_070--Hb_001300_250 Hb_007558_130 Hb_007558_130 Hb_000834_070--Hb_007558_130 Hb_000834_070--Hb_003197_010 Hb_001728_120 Hb_001728_120 Hb_000834_070--Hb_001728_120 Hb_002073_110 Hb_002073_110 Hb_000834_070--Hb_002073_110 Hb_016564_010 Hb_016564_010 Hb_000389_050--Hb_016564_010 Hb_000465_320 Hb_000465_320 Hb_000389_050--Hb_000465_320 Hb_042202_060 Hb_042202_060 Hb_000389_050--Hb_042202_060 Hb_020301_030 Hb_020301_030 Hb_000389_050--Hb_020301_030 Hb_000389_050--Hb_000365_370 Hb_000679_220 Hb_000679_220 Hb_000389_050--Hb_000679_220 Hb_062522_010 Hb_062522_010 Hb_000107_510--Hb_062522_010 Hb_000107_510--Hb_000167_050 Hb_031527_110 Hb_031527_110 Hb_000107_510--Hb_031527_110 Hb_001904_050 Hb_001904_050 Hb_000107_510--Hb_001904_050 Hb_002174_040 Hb_002174_040 Hb_000107_510--Hb_002174_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0659266 0 0.569056 0.825453 0 0.0594674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155058 0.487192 1.01223 0 1.33824

CAGE analysis