Hb_004102_050

Information

Type -
Description -
Location Contig4102: 22905-24233
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17380g
description POPTRDRAFT_640645; hypothetical protein
nr
ID BAJ53247.1
description JHL25H03.10 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUD7
description JHL25H03.10 protein OS=Jatropha curcas GN=JHL25H03.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_050 0.0 - - JHL25H03.10 [Jatropha curcas]
2 Hb_006054_020 0.1310662342 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003025_010 0.1956503734 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
4 Hb_007527_030 0.2237894979 - - -
5 Hb_001486_140 0.2337640494 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
6 Hb_000191_160 0.2515511639 - - hypothetical protein EUGRSUZ_C03547 [Eucalyptus grandis]
7 Hb_011377_010 0.2569593684 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
8 Hb_046417_010 0.2797310732 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
9 Hb_000915_150 0.2820716862 - - -
10 Hb_000836_610 0.2841141106 - - stem-specific protein TSJT1-like [Jatropha curcas]
11 Hb_002603_030 0.3031561687 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
12 Hb_001489_140 0.30444981 transcription factor TF Family: AP2 hypothetical protein JCGZ_21694 [Jatropha curcas]
13 Hb_002837_100 0.3047986105 - - PREDICTED: F-box protein PP2-B15-like [Jatropha curcas]
14 Hb_001921_020 0.3053959216 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X2 [Jatropha curcas]
15 Hb_001100_030 0.3088560413 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
16 Hb_012052_030 0.3130239536 - - -
17 Hb_002783_200 0.3141644967 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
18 Hb_005839_100 0.3221680157 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
19 Hb_042083_060 0.3272441619 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
20 Hb_006920_040 0.3300799077 - - PREDICTED: uncharacterized protein LOC103341644 [Prunus mume]

Gene co-expression network

sample Hb_004102_050 Hb_004102_050 Hb_006054_020 Hb_006054_020 Hb_004102_050--Hb_006054_020 Hb_003025_010 Hb_003025_010 Hb_004102_050--Hb_003025_010 Hb_007527_030 Hb_007527_030 Hb_004102_050--Hb_007527_030 Hb_001486_140 Hb_001486_140 Hb_004102_050--Hb_001486_140 Hb_000191_160 Hb_000191_160 Hb_004102_050--Hb_000191_160 Hb_011377_010 Hb_011377_010 Hb_004102_050--Hb_011377_010 Hb_006054_020--Hb_003025_010 Hb_001921_020 Hb_001921_020 Hb_006054_020--Hb_001921_020 Hb_006054_020--Hb_000191_160 Hb_046417_010 Hb_046417_010 Hb_006054_020--Hb_046417_010 Hb_006054_020--Hb_001486_140 Hb_003025_010--Hb_001921_020 Hb_048476_010 Hb_048476_010 Hb_003025_010--Hb_048476_010 Hb_080147_060 Hb_080147_060 Hb_003025_010--Hb_080147_060 Hb_003025_010--Hb_000191_160 Hb_012052_030 Hb_012052_030 Hb_007527_030--Hb_012052_030 Hb_007527_030--Hb_000191_160 Hb_007527_030--Hb_006054_020 Hb_007527_030--Hb_001486_140 Hb_002837_100 Hb_002837_100 Hb_007527_030--Hb_002837_100 Hb_005839_100 Hb_005839_100 Hb_001486_140--Hb_005839_100 Hb_001100_030 Hb_001100_030 Hb_001486_140--Hb_001100_030 Hb_147996_010 Hb_147996_010 Hb_001486_140--Hb_147996_010 Hb_000836_610 Hb_000836_610 Hb_001486_140--Hb_000836_610 Hb_006920_040 Hb_006920_040 Hb_000191_160--Hb_006920_040 Hb_002553_100 Hb_002553_100 Hb_000191_160--Hb_002553_100 Hb_000165_120 Hb_000165_120 Hb_011377_010--Hb_000165_120 Hb_000692_210 Hb_000692_210 Hb_011377_010--Hb_000692_210 Hb_005725_230 Hb_005725_230 Hb_011377_010--Hb_005725_230 Hb_011377_010--Hb_000836_610 Hb_001489_140 Hb_001489_140 Hb_011377_010--Hb_001489_140 Hb_000915_150 Hb_000915_150 Hb_011377_010--Hb_000915_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0350764 0.0350368 0.0800044 0.0133043 0 0.0308216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126181 0

CAGE analysis