Hb_004102_060

Information

Type -
Description -
Location Contig4102: 29398-34460
Sequence    

Annotation

kegg
ID sbi:SORBI_04g007140
description SORBIDRAFT_04g007140, Sb04g007140; hypothetical protein
nr
ID BAJ53248.1
description JHL25H03.11 [Jatropha curcas]
swissprot
ID O48652
description (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
trembl
ID A0A0D9YNZ5
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID GO:0003904
description (6-4)dna photolyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40525: 31928-32270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_060 0.0 - - JHL25H03.11 [Jatropha curcas]
2 Hb_000020_090 0.0850046641 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
3 Hb_002042_180 0.101315283 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
4 Hb_000358_160 0.1058512 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
5 Hb_000313_250 0.1064843685 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
6 Hb_005000_110 0.1145621838 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
7 Hb_027684_010 0.1159222292 - - hypothetical protein RCOM_0504250 [Ricinus communis]
8 Hb_000638_220 0.1218800279 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
9 Hb_000722_030 0.1219414685 - - putative plant disease resistance family protein [Populus trichocarpa]
10 Hb_000005_060 0.1220852123 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
11 Hb_000116_220 0.1232166211 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009838_070 0.1235684527 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
13 Hb_000645_260 0.1237423953 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
14 Hb_004223_150 0.1238608784 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
15 Hb_001148_110 0.1240826402 - - -
16 Hb_092516_010 0.1244598193 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
17 Hb_021443_060 0.1247833765 - - PTH-1 family protein [Populus trichocarpa]
18 Hb_012395_090 0.1252685939 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
19 Hb_001266_010 0.1259666479 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
20 Hb_000123_360 0.1265883804 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004102_060 Hb_004102_060 Hb_000020_090 Hb_000020_090 Hb_004102_060--Hb_000020_090 Hb_002042_180 Hb_002042_180 Hb_004102_060--Hb_002042_180 Hb_000358_160 Hb_000358_160 Hb_004102_060--Hb_000358_160 Hb_000313_250 Hb_000313_250 Hb_004102_060--Hb_000313_250 Hb_005000_110 Hb_005000_110 Hb_004102_060--Hb_005000_110 Hb_027684_010 Hb_027684_010 Hb_004102_060--Hb_027684_010 Hb_002702_010 Hb_002702_010 Hb_000020_090--Hb_002702_010 Hb_012395_090 Hb_012395_090 Hb_000020_090--Hb_012395_090 Hb_000156_110 Hb_000156_110 Hb_000020_090--Hb_000156_110 Hb_004635_120 Hb_004635_120 Hb_000020_090--Hb_004635_120 Hb_002818_150 Hb_002818_150 Hb_000020_090--Hb_002818_150 Hb_000722_030 Hb_000722_030 Hb_002042_180--Hb_000722_030 Hb_001148_110 Hb_001148_110 Hb_002042_180--Hb_001148_110 Hb_002042_180--Hb_027684_010 Hb_023582_010 Hb_023582_010 Hb_002042_180--Hb_023582_010 Hb_002518_040 Hb_002518_040 Hb_002042_180--Hb_002518_040 Hb_092516_010 Hb_092516_010 Hb_000358_160--Hb_092516_010 Hb_001655_080 Hb_001655_080 Hb_000358_160--Hb_001655_080 Hb_000358_160--Hb_027684_010 Hb_021443_060 Hb_021443_060 Hb_000358_160--Hb_021443_060 Hb_000358_160--Hb_000313_250 Hb_000345_400 Hb_000345_400 Hb_000358_160--Hb_000345_400 Hb_000890_170 Hb_000890_170 Hb_000313_250--Hb_000890_170 Hb_110266_010 Hb_110266_010 Hb_000313_250--Hb_110266_010 Hb_000313_250--Hb_092516_010 Hb_002007_120 Hb_002007_120 Hb_000313_250--Hb_002007_120 Hb_000313_250--Hb_021443_060 Hb_000005_060 Hb_000005_060 Hb_000313_250--Hb_000005_060 Hb_001343_030 Hb_001343_030 Hb_005000_110--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_005000_110--Hb_007597_030 Hb_000808_130 Hb_000808_130 Hb_005000_110--Hb_000808_130 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_023344_090 Hb_023344_090 Hb_005000_110--Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_005000_110--Hb_001488_250 Hb_027684_010--Hb_000722_030 Hb_027684_010--Hb_001655_080 Hb_002066_100 Hb_002066_100 Hb_027684_010--Hb_002066_100 Hb_027684_010--Hb_002518_040 Hb_027684_010--Hb_021443_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0453956 3.73133 45.5046 21.9994 0.254542 0.763942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21181 0.953358 0 1.84309 32.6213

CAGE analysis