Hb_004102_070

Information

Type -
Description -
Location Contig4102: 34987-40454
Sequence    

Annotation

kegg
ID rcu:RCOM_0897910
description cytochrome C oxidase, putative
nr
ID KHG10707.1
description Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
swissprot
ID Q9SSB8
description Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana GN=COX5B-2 PE=2 SV=1
trembl
ID A0A0B0NDE1
description Cytochrome c oxidase subunit 5b-2, mitochondrial-like protein OS=Gossypium arboreum GN=F383_01453 PE=4 SV=1
Gene Ontology
ID GO:0005740
description cytochrome c oxidase subunit 5b- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40526: 35039-40346
cDNA
(Sanger)
(ID:Location)		 006_N14.ab1: 35039-39991 , 009_I01.ab1: 35080-40056 , 012_F22.ab1: 35039-39934 , 036_J11.ab1: 35080-39980 , 036_N23.ab1: 35039-39957 , 042_C16.ab1: 35080-39937 , 045_N09.ab1: 35080-39986

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_070 0.0 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
2 Hb_143766_010 0.075750532 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
3 Hb_000996_140 0.0831014139 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
4 Hb_001616_040 0.0844084791 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
5 Hb_004459_040 0.0885340437 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
6 Hb_000668_040 0.089571666 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
7 Hb_018124_010 0.0904530605 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
8 Hb_003226_100 0.0909876191 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
9 Hb_000982_090 0.0919876344 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
10 Hb_026053_020 0.0922653713 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
11 Hb_009182_010 0.0925403617 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
12 Hb_007576_170 0.092752841 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010175_040 0.0930308187 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
14 Hb_007441_300 0.093892439 - - ATP binding protein, putative [Ricinus communis]
15 Hb_007441_330 0.0940451852 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
16 Hb_000317_070 0.094054953 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
17 Hb_004871_020 0.0940909761 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
18 Hb_150651_040 0.0950897459 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
19 Hb_001604_060 0.0952672019 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
20 Hb_000189_240 0.0964971319 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]

Gene co-expression network

sample Hb_004102_070 Hb_004102_070 Hb_143766_010 Hb_143766_010 Hb_004102_070--Hb_143766_010 Hb_000996_140 Hb_000996_140 Hb_004102_070--Hb_000996_140 Hb_001616_040 Hb_001616_040 Hb_004102_070--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_004102_070--Hb_004459_040 Hb_000668_040 Hb_000668_040 Hb_004102_070--Hb_000668_040 Hb_018124_010 Hb_018124_010 Hb_004102_070--Hb_018124_010 Hb_007012_060 Hb_007012_060 Hb_143766_010--Hb_007012_060 Hb_027654_050 Hb_027654_050 Hb_143766_010--Hb_027654_050 Hb_010175_040 Hb_010175_040 Hb_143766_010--Hb_010175_040 Hb_021596_090 Hb_021596_090 Hb_143766_010--Hb_021596_090 Hb_009182_010 Hb_009182_010 Hb_143766_010--Hb_009182_010 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_000996_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_001616_040--Hb_010175_040 Hb_001616_040--Hb_003226_100 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_000201_120 Hb_000201_120 Hb_000668_040--Hb_000201_120 Hb_001832_010 Hb_001832_010 Hb_000668_040--Hb_001832_010 Hb_000668_040--Hb_000680_140 Hb_001396_100 Hb_001396_100 Hb_000668_040--Hb_001396_100 Hb_002016_100 Hb_002016_100 Hb_000668_040--Hb_002016_100 Hb_010080_090 Hb_010080_090 Hb_000668_040--Hb_010080_090 Hb_004767_080 Hb_004767_080 Hb_018124_010--Hb_004767_080 Hb_018124_010--Hb_143766_010 Hb_003787_010 Hb_003787_010 Hb_018124_010--Hb_003787_010 Hb_004052_050 Hb_004052_050 Hb_018124_010--Hb_004052_050 Hb_000417_360 Hb_000417_360 Hb_018124_010--Hb_000417_360 Hb_000701_100 Hb_000701_100 Hb_018124_010--Hb_000701_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.6476 23.0267 62.6239 73.221 40.39 57.2799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.485 194.751 84.0747 73.0815 59.8161

CAGE analysis