Hb_004102_080

Information

Type -
Description -
Location Contig4102: 45951-50595
Sequence    

Annotation

kegg
ID rcu:RCOM_0897920
description Acyl-protein thioesterase, putative (EC:3.1.1.1)
nr
ID XP_012073237.1
description PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
swissprot
ID O95372
description Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1
trembl
ID E6NUE0
description JHL25H03.13 protein OS=Jatropha curcas GN=JHL25H03.13 PE=4 SV=1
Gene Ontology
ID GO:0052689
description phospholipase carboxylesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40528: 45980-50561 , PASA_asmbl_40529: 45826-50576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_080 0.0 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
2 Hb_003915_020 0.0962988121 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
3 Hb_000175_200 0.1146292831 - - conserved hypothetical protein [Ricinus communis]
4 Hb_121089_010 0.1203102439 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
5 Hb_000926_040 0.1289725362 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
6 Hb_021346_050 0.1291851156 - - xylulose kinase, putative [Ricinus communis]
7 Hb_010868_040 0.1332045128 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
8 Hb_000940_030 0.1336224672 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
9 Hb_001227_140 0.1370119761 - - PREDICTED: protein ROS1 [Jatropha curcas]
10 Hb_003020_070 0.1391170779 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
11 Hb_003119_130 0.1426218523 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
12 Hb_000270_280 0.1430906022 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
13 Hb_000345_400 0.1463358954 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000009_420 0.1475654947 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
15 Hb_001500_080 0.147887997 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
16 Hb_002641_120 0.1485564245 - - PREDICTED: calmodulin [Jatropha curcas]
17 Hb_001638_190 0.1492547667 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
18 Hb_000042_090 0.1493119435 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
19 Hb_000310_060 0.1493789648 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
20 Hb_003398_040 0.1507509941 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004102_080 Hb_004102_080 Hb_003915_020 Hb_003915_020 Hb_004102_080--Hb_003915_020 Hb_000175_200 Hb_000175_200 Hb_004102_080--Hb_000175_200 Hb_121089_010 Hb_121089_010 Hb_004102_080--Hb_121089_010 Hb_000926_040 Hb_000926_040 Hb_004102_080--Hb_000926_040 Hb_021346_050 Hb_021346_050 Hb_004102_080--Hb_021346_050 Hb_010868_040 Hb_010868_040 Hb_004102_080--Hb_010868_040 Hb_001227_140 Hb_001227_140 Hb_003915_020--Hb_001227_140 Hb_003141_060 Hb_003141_060 Hb_003915_020--Hb_003141_060 Hb_003915_020--Hb_121089_010 Hb_000940_030 Hb_000940_030 Hb_003915_020--Hb_000940_030 Hb_000948_120 Hb_000948_120 Hb_003915_020--Hb_000948_120 Hb_000212_270 Hb_000212_270 Hb_000175_200--Hb_000212_270 Hb_003119_130 Hb_003119_130 Hb_000175_200--Hb_003119_130 Hb_000345_400 Hb_000345_400 Hb_000175_200--Hb_000345_400 Hb_001898_100 Hb_001898_100 Hb_000175_200--Hb_001898_100 Hb_001638_190 Hb_001638_190 Hb_000175_200--Hb_001638_190 Hb_121089_010--Hb_000948_120 Hb_000120_490 Hb_000120_490 Hb_121089_010--Hb_000120_490 Hb_003680_060 Hb_003680_060 Hb_121089_010--Hb_003680_060 Hb_121089_010--Hb_001227_140 Hb_000926_040--Hb_010868_040 Hb_006816_250 Hb_006816_250 Hb_000926_040--Hb_006816_250 Hb_000243_060 Hb_000243_060 Hb_000926_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_000926_040--Hb_010381_040 Hb_004855_020 Hb_004855_020 Hb_000926_040--Hb_004855_020 Hb_000120_300 Hb_000120_300 Hb_021346_050--Hb_000120_300 Hb_000032_610 Hb_000032_610 Hb_021346_050--Hb_000032_610 Hb_007943_180 Hb_007943_180 Hb_021346_050--Hb_007943_180 Hb_021346_050--Hb_010868_040 Hb_002942_120 Hb_002942_120 Hb_021346_050--Hb_002942_120 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_010868_040--Hb_000940_030 Hb_000207_350 Hb_000207_350 Hb_010868_040--Hb_000207_350 Hb_010868_040--Hb_000243_060 Hb_010868_040--Hb_010381_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173702 3.93632 27.7955 8.28019 0.143549 0.148321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29387 1.57894 0.510053 5.93497 16.8716

CAGE analysis