Hb_004102_090

Information

Type transcription factor
Description TF Family: CPP
Location Contig4102: 51173-56389
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17350g
description POPTRDRAFT_751483; cysteine-rich polycomb-like family protein
nr
ID KDP37130.1
description hypothetical protein JCGZ_06186 [Jatropha curcas]
swissprot
ID Q9LUI3
description CRC domain-containing protein TSO1 OS=Arabidopsis thaliana GN=TSO1 PE=1 SV=1
trembl
ID A0A067KXY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06186 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40531: 53215-54032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_090 0.0 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
2 Hb_002205_180 0.0519986321 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
3 Hb_004963_020 0.0884670109 - - PREDICTED: patellin-4 [Populus euphratica]
4 Hb_000441_210 0.0914426682 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
5 Hb_000316_070 0.0928945279 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
6 Hb_006520_030 0.0932004805 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
7 Hb_000189_350 0.0960223748 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
8 Hb_001864_040 0.0972010024 - - PREDICTED: kinesin-1 [Jatropha curcas]
9 Hb_010705_040 0.0985251871 - - PREDICTED: kinesin-4 [Jatropha curcas]
10 Hb_000028_530 0.0986703527 - - Protein regulator of cytokinesis, putative [Ricinus communis]
11 Hb_001168_030 0.0990539346 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
12 Hb_004635_020 0.1022185877 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_011849_010 0.1029668946 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
14 Hb_000069_510 0.1047052865 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
15 Hb_002837_030 0.111023628 - - conserved hypothetical protein [Ricinus communis]
16 Hb_080952_060 0.112866835 - - PREDICTED: patellin-4 [Populus euphratica]
17 Hb_003776_050 0.1130541707 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
18 Hb_004032_390 0.1131438832 - - CDK, putative [Ricinus communis]
19 Hb_005276_090 0.1131562092 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
20 Hb_000614_200 0.1140583567 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]

Gene co-expression network

sample Hb_004102_090 Hb_004102_090 Hb_002205_180 Hb_002205_180 Hb_004102_090--Hb_002205_180 Hb_004963_020 Hb_004963_020 Hb_004102_090--Hb_004963_020 Hb_000441_210 Hb_000441_210 Hb_004102_090--Hb_000441_210 Hb_000316_070 Hb_000316_070 Hb_004102_090--Hb_000316_070 Hb_006520_030 Hb_006520_030 Hb_004102_090--Hb_006520_030 Hb_000189_350 Hb_000189_350 Hb_004102_090--Hb_000189_350 Hb_002205_180--Hb_000189_350 Hb_002205_180--Hb_000441_210 Hb_010705_040 Hb_010705_040 Hb_002205_180--Hb_010705_040 Hb_002205_180--Hb_006520_030 Hb_033152_060 Hb_033152_060 Hb_002205_180--Hb_033152_060 Hb_002473_030 Hb_002473_030 Hb_004963_020--Hb_002473_030 Hb_004963_020--Hb_000316_070 Hb_001168_030 Hb_001168_030 Hb_004963_020--Hb_001168_030 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_002837_030 Hb_002837_030 Hb_004963_020--Hb_002837_030 Hb_005649_050 Hb_005649_050 Hb_004963_020--Hb_005649_050 Hb_000441_210--Hb_004963_020 Hb_000441_210--Hb_010705_040 Hb_001454_180 Hb_001454_180 Hb_000441_210--Hb_001454_180 Hb_000441_210--Hb_001168_030 Hb_011849_010 Hb_011849_010 Hb_000316_070--Hb_011849_010 Hb_004635_020 Hb_004635_020 Hb_000316_070--Hb_004635_020 Hb_000614_200 Hb_000614_200 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_007245_030 Hb_007245_030 Hb_000316_070--Hb_007245_030 Hb_006520_030--Hb_011849_010 Hb_001998_180 Hb_001998_180 Hb_006520_030--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_006520_030--Hb_003776_050 Hb_080952_060 Hb_080952_060 Hb_006520_030--Hb_080952_060 Hb_001969_120 Hb_001969_120 Hb_006520_030--Hb_001969_120 Hb_003777_260 Hb_003777_260 Hb_006520_030--Hb_003777_260 Hb_000189_350--Hb_033152_060 Hb_000189_350--Hb_000316_070 Hb_027905_040 Hb_027905_040 Hb_000189_350--Hb_027905_040 Hb_000189_350--Hb_011849_010 Hb_000028_530 Hb_000028_530 Hb_000189_350--Hb_000028_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0259628 0.058181 2.00881 0.734439 0.0150073 0.0215744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0429586 0 0.1365 0.0912564

CAGE analysis