Hb_004102_100

Information

Type -
Description -
Location Contig4102: 56887-62771
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17340g
description POPTRDRAFT_751482; transducin family protein
nr
ID XP_012073236.1
description PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
swissprot
ID Q5RFQ3
description Periodic tryptophan protein 2 homolog OS=Pongo abelii GN=PWP2 PE=2 SV=1
trembl
ID E6NUE1
description JHL25H03.15 protein OS=Jatropha curcas GN=JHL25H03.15 PE=4 SV=1
Gene Ontology
ID GO:0005730
description periodic tryptophan protein 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40533: 57052-57541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_100 0.0 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
2 Hb_000175_390 0.0647200088 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
3 Hb_073171_080 0.09002567 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
4 Hb_000088_200 0.0914922619 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_004724_360 0.0950748392 - - OTU-like cysteine protease family protein [Populus trichocarpa]
6 Hb_000684_420 0.1019431248 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
7 Hb_000035_400 0.1031734278 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
8 Hb_005237_060 0.1051436741 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
9 Hb_004044_020 0.1054199935 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
10 Hb_004993_010 0.1065199163 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
11 Hb_000291_120 0.1083343506 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
12 Hb_001663_110 0.1124970375 - - RNA binding protein, putative [Ricinus communis]
13 Hb_000284_200 0.1126469515 - - -
14 Hb_009411_020 0.1126691839 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
15 Hb_001141_330 0.1128888126 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
16 Hb_150528_010 0.1130128266 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000236_280 0.1132538537 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
18 Hb_000906_060 0.114387856 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
19 Hb_000076_080 0.1144026591 - - PREDICTED: protein MOS2 [Jatropha curcas]
20 Hb_006816_320 0.1147873793 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]

Gene co-expression network

sample Hb_004102_100 Hb_004102_100 Hb_000175_390 Hb_000175_390 Hb_004102_100--Hb_000175_390 Hb_073171_080 Hb_073171_080 Hb_004102_100--Hb_073171_080 Hb_000088_200 Hb_000088_200 Hb_004102_100--Hb_000088_200 Hb_004724_360 Hb_004724_360 Hb_004102_100--Hb_004724_360 Hb_000684_420 Hb_000684_420 Hb_004102_100--Hb_000684_420 Hb_000035_400 Hb_000035_400 Hb_004102_100--Hb_000035_400 Hb_000175_390--Hb_000088_200 Hb_009411_020 Hb_009411_020 Hb_000175_390--Hb_009411_020 Hb_004044_020 Hb_004044_020 Hb_000175_390--Hb_004044_020 Hb_007534_040 Hb_007534_040 Hb_000175_390--Hb_007534_040 Hb_000156_140 Hb_000156_140 Hb_000175_390--Hb_000156_140 Hb_073171_080--Hb_000684_420 Hb_073171_080--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_073171_080--Hb_000327_310 Hb_000236_280 Hb_000236_280 Hb_073171_080--Hb_000236_280 Hb_001396_290 Hb_001396_290 Hb_073171_080--Hb_001396_290 Hb_002400_180 Hb_002400_180 Hb_073171_080--Hb_002400_180 Hb_000088_200--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000088_200--Hb_004525_100 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_004724_360--Hb_000327_310 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_000684_420--Hb_000076_080 Hb_002097_090 Hb_002097_090 Hb_000684_420--Hb_002097_090 Hb_000186_280 Hb_000186_280 Hb_000684_420--Hb_000186_280 Hb_000684_420--Hb_002400_180 Hb_000318_140 Hb_000318_140 Hb_000035_400--Hb_000318_140 Hb_000035_400--Hb_007534_040 Hb_000035_400--Hb_073171_080 Hb_005129_050 Hb_005129_050 Hb_000035_400--Hb_005129_050 Hb_000291_120 Hb_000291_120 Hb_000035_400--Hb_000291_120 Hb_000230_370 Hb_000230_370 Hb_000035_400--Hb_000230_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.58264 1.42457 0.85167 0.253741 3.47507 4.14652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.955011 1.97267 1.20318 0.703255 0.656547

CAGE analysis