Hb_004102_110

Information

Type -
Description -
Location Contig4102: 63136-76015
Sequence    

Annotation

kegg
ID rcu:RCOM_0897960
description Monothiol glutaredoxin-4, putative
nr
ID XP_002517580.1
description Monothiol glutaredoxin-4, putative [Ricinus communis]
swissprot
ID Q8LBK6
description Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2
trembl
ID B9RV11
description Monothiol glutaredoxin-4, putative OS=Ricinus communis GN=RCOM_0897960 PE=4 SV=1
Gene Ontology
ID GO:0005623
description monothiol glutaredoxin- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40534: 63273-76064 , PASA_asmbl_40536: 70665-71083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_110 0.0 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
2 Hb_024439_010 0.0666366548 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
3 Hb_000016_160 0.0668330414 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
4 Hb_004143_150 0.0678092434 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
5 Hb_026527_050 0.0707956582 - - PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
6 Hb_009615_070 0.0728041278 - - type X protein phosphatase-II [Populus trichocarpa]
7 Hb_000527_060 0.0736562487 - - Protein C20orf11, putative [Ricinus communis]
8 Hb_001123_130 0.0738293626 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
9 Hb_003605_090 0.0760773914 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
10 Hb_075449_010 0.0774942345 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
11 Hb_000390_300 0.0780381737 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
12 Hb_003994_250 0.0795027769 - - membrane associated ring finger 1,8, putative [Ricinus communis]
13 Hb_000172_320 0.0805210859 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
14 Hb_000005_090 0.0818618097 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
15 Hb_000667_070 0.083846938 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_000261_140 0.0843702595 - - -
17 Hb_000920_110 0.0844899968 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
18 Hb_001484_070 0.0875940023 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004127_020 0.0887874324 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
20 Hb_000805_240 0.0891730278 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004102_110 Hb_004102_110 Hb_024439_010 Hb_024439_010 Hb_004102_110--Hb_024439_010 Hb_000016_160 Hb_000016_160 Hb_004102_110--Hb_000016_160 Hb_004143_150 Hb_004143_150 Hb_004102_110--Hb_004143_150 Hb_026527_050 Hb_026527_050 Hb_004102_110--Hb_026527_050 Hb_009615_070 Hb_009615_070 Hb_004102_110--Hb_009615_070 Hb_000527_060 Hb_000527_060 Hb_004102_110--Hb_000527_060 Hb_000390_300 Hb_000390_300 Hb_024439_010--Hb_000390_300 Hb_017895_040 Hb_017895_040 Hb_024439_010--Hb_017895_040 Hb_004058_030 Hb_004058_030 Hb_024439_010--Hb_004058_030 Hb_005496_140 Hb_005496_140 Hb_024439_010--Hb_005496_140 Hb_004696_080 Hb_004696_080 Hb_024439_010--Hb_004696_080 Hb_028515_010 Hb_028515_010 Hb_000016_160--Hb_028515_010 Hb_010812_120 Hb_010812_120 Hb_000016_160--Hb_010812_120 Hb_003697_040 Hb_003697_040 Hb_000016_160--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000016_160--Hb_003605_090 Hb_000120_020 Hb_000120_020 Hb_000016_160--Hb_000120_020 Hb_004899_370 Hb_004899_370 Hb_004143_150--Hb_004899_370 Hb_000001_060 Hb_000001_060 Hb_004143_150--Hb_000001_060 Hb_000920_110 Hb_000920_110 Hb_004143_150--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_004143_150--Hb_004127_020 Hb_006615_240 Hb_006615_240 Hb_004143_150--Hb_006615_240 Hb_006198_070 Hb_006198_070 Hb_026527_050--Hb_006198_070 Hb_003052_190 Hb_003052_190 Hb_026527_050--Hb_003052_190 Hb_000667_070 Hb_000667_070 Hb_026527_050--Hb_000667_070 Hb_003540_240 Hb_003540_240 Hb_026527_050--Hb_003540_240 Hb_026527_050--Hb_005496_140 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_009615_070--Hb_003605_090 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_009615_070--Hb_004889_010 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_012286_030 Hb_012286_030 Hb_000527_060--Hb_012286_030 Hb_001123_130 Hb_001123_130 Hb_000527_060--Hb_001123_130 Hb_000261_140 Hb_000261_140 Hb_000527_060--Hb_000261_140 Hb_000115_220 Hb_000115_220 Hb_000527_060--Hb_000115_220 Hb_000527_060--Hb_004143_150 Hb_000527_060--Hb_000920_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1959 13.449 15.6455 22.4916 15.8801 19.3021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2495 51.3737 29.2812 15.4561 14.1418

CAGE analysis