Hb_004102_120

Information

Type -
Description -
Location Contig4102: 78974-79336
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_120 0.0 - - -
2 Hb_003861_130 0.044879665 - - -
3 Hb_001623_030 0.0823257512 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_062827_010 0.0948812526 - - -
5 Hb_135978_010 0.1163190956 - - hypothetical protein EUGRSUZ_J026621, partial [Eucalyptus grandis]
6 Hb_011692_030 0.1440673942 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
7 Hb_020763_020 0.1450809437 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
8 Hb_003041_040 0.1803046543 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
9 Hb_010490_030 0.293483364 - - -
10 Hb_000889_090 0.3306876479 - - isocitrate lyase, putative [Ricinus communis]
11 Hb_032299_050 0.3374270919 - - -
12 Hb_002719_070 0.3500857439 - - gibberellin 20-oxidase, putative [Ricinus communis]
13 Hb_004631_120 0.3599250737 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000313_020 0.3645254109 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
15 Hb_011609_160 0.3689922402 - - Lipase, putative [Ricinus communis]
16 Hb_000092_160 0.3695381836 - - PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
17 Hb_001205_010 0.3715182787 - - -
18 Hb_074197_060 0.3808427679 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
19 Hb_000836_200 0.3828228984 - - -
20 Hb_007105_010 0.3855750163 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]

Gene co-expression network

sample Hb_004102_120 Hb_004102_120 Hb_003861_130 Hb_003861_130 Hb_004102_120--Hb_003861_130 Hb_001623_030 Hb_001623_030 Hb_004102_120--Hb_001623_030 Hb_062827_010 Hb_062827_010 Hb_004102_120--Hb_062827_010 Hb_135978_010 Hb_135978_010 Hb_004102_120--Hb_135978_010 Hb_011692_030 Hb_011692_030 Hb_004102_120--Hb_011692_030 Hb_020763_020 Hb_020763_020 Hb_004102_120--Hb_020763_020 Hb_003861_130--Hb_001623_030 Hb_003861_130--Hb_135978_010 Hb_003861_130--Hb_062827_010 Hb_003861_130--Hb_011692_030 Hb_003861_130--Hb_020763_020 Hb_001623_030--Hb_135978_010 Hb_001623_030--Hb_062827_010 Hb_001623_030--Hb_011692_030 Hb_001623_030--Hb_020763_020 Hb_062827_010--Hb_011692_030 Hb_062827_010--Hb_020763_020 Hb_003041_040 Hb_003041_040 Hb_062827_010--Hb_003041_040 Hb_135978_010--Hb_062827_010 Hb_135978_010--Hb_011692_030 Hb_135978_010--Hb_020763_020 Hb_011692_030--Hb_020763_020 Hb_011692_030--Hb_003041_040 Hb_020763_020--Hb_003041_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.498109 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.561245 0 0 0 0

CAGE analysis