Hb_004102_130

Information

Type -
Description -
Location Contig4102: 82277-83500
Sequence    

Annotation

kegg
ID rcu:RCOM_1006920
description hypothetical protein
nr
ID XP_002531527.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZV8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1006920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40537: 82333-82702 , PASA_asmbl_40539: 83244-84657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_172256_010 0.0975688167 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_000016_180 0.1056577294 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
4 Hb_003673_020 0.1128448846 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
5 Hb_000211_080 0.1153238201 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
6 Hb_004531_090 0.1202195885 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
7 Hb_000176_170 0.1208078863 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
8 Hb_031862_170 0.12254761 - - immunophilin, putative [Ricinus communis]
9 Hb_005568_070 0.1280603312 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
10 Hb_000779_040 0.1284085396 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
11 Hb_000619_070 0.136473426 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
12 Hb_035360_010 0.1392569468 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
13 Hb_174865_050 0.1404075701 - - PREDICTED: neuroguidin [Jatropha curcas]
14 Hb_001034_020 0.1443226952 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
15 Hb_000018_160 0.1451307233 - - nitrate transporter, putative [Ricinus communis]
16 Hb_000173_370 0.1452071722 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
17 Hb_019871_020 0.1468178503 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
18 Hb_061256_030 0.1472718254 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
19 Hb_000185_090 0.1493129652 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
20 Hb_009421_030 0.1496338695 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]

Gene co-expression network

sample Hb_004102_130 Hb_004102_130 Hb_172256_010 Hb_172256_010 Hb_004102_130--Hb_172256_010 Hb_000016_180 Hb_000016_180 Hb_004102_130--Hb_000016_180 Hb_003673_020 Hb_003673_020 Hb_004102_130--Hb_003673_020 Hb_000211_080 Hb_000211_080 Hb_004102_130--Hb_000211_080 Hb_004531_090 Hb_004531_090 Hb_004102_130--Hb_004531_090 Hb_000176_170 Hb_000176_170 Hb_004102_130--Hb_000176_170 Hb_172256_010--Hb_000211_080 Hb_000779_040 Hb_000779_040 Hb_172256_010--Hb_000779_040 Hb_172256_010--Hb_003673_020 Hb_000890_220 Hb_000890_220 Hb_172256_010--Hb_000890_220 Hb_172256_010--Hb_000016_180 Hb_113216_010 Hb_113216_010 Hb_000016_180--Hb_113216_010 Hb_000185_090 Hb_000185_090 Hb_000016_180--Hb_000185_090 Hb_000016_180--Hb_000779_040 Hb_002918_070 Hb_002918_070 Hb_000016_180--Hb_002918_070 Hb_000792_110 Hb_000792_110 Hb_000016_180--Hb_000792_110 Hb_000213_060 Hb_000213_060 Hb_000016_180--Hb_000213_060 Hb_035360_010 Hb_035360_010 Hb_003673_020--Hb_035360_010 Hb_003673_020--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_003673_020--Hb_000211_090 Hb_003673_020--Hb_000211_080 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_000211_080--Hb_000779_040 Hb_000211_080--Hb_000792_110 Hb_000211_080--Hb_035360_010 Hb_000211_080--Hb_000211_090 Hb_004531_090--Hb_000779_040 Hb_002025_140 Hb_002025_140 Hb_004531_090--Hb_002025_140 Hb_000291_120 Hb_000291_120 Hb_004531_090--Hb_000291_120 Hb_004531_090--Hb_000211_090 Hb_000573_040 Hb_000573_040 Hb_004531_090--Hb_000573_040 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020 Hb_098315_110 Hb_098315_110 Hb_000176_170--Hb_098315_110 Hb_000208_290 Hb_000208_290 Hb_000176_170--Hb_000208_290 Hb_011457_110 Hb_011457_110 Hb_000176_170--Hb_011457_110 Hb_000300_530 Hb_000300_530 Hb_000176_170--Hb_000300_530 Hb_006029_010 Hb_006029_010 Hb_000176_170--Hb_006029_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.425 23.7778 10.2744 6.74132 198.684 176.516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7112 12.8724 51.5385 19.4829 9.94443

CAGE analysis