Hb_004102_140

Information

Type -
Description -
Location Contig4102: 89739-96140
Sequence    

Annotation

kegg
ID rcu:RCOM_0897990
description hypothetical protein
nr
ID XP_002517583.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9HE11
description U3 small nucleolar RNA-associated protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp5 PE=3 SV=2
trembl
ID B9RV14
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0897990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40540: 89784-93885 , PASA_asmbl_40541: 93906-96027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003966_030 0.0524641159 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
3 Hb_001488_410 0.0585002679 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
4 Hb_001617_060 0.0609180871 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
5 Hb_003362_070 0.065901635 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
6 Hb_000820_170 0.0680498972 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
7 Hb_004096_100 0.0692755655 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
8 Hb_006252_040 0.0696080791 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
9 Hb_000025_110 0.0706036777 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
10 Hb_000173_510 0.0709421532 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
11 Hb_000470_070 0.0709684097 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
12 Hb_000283_070 0.0711789339 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
13 Hb_002493_020 0.0726840089 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
14 Hb_016898_010 0.0730134142 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
15 Hb_000785_040 0.0733164755 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
16 Hb_004935_030 0.0746512569 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
17 Hb_000613_080 0.0757864404 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
18 Hb_002716_130 0.0763544886 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
19 Hb_000116_500 0.0770162741 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
20 Hb_001025_080 0.0773736591 - - hypothetical protein JCGZ_11431 [Jatropha curcas]

Gene co-expression network

sample Hb_004102_140 Hb_004102_140 Hb_003966_030 Hb_003966_030 Hb_004102_140--Hb_003966_030 Hb_001488_410 Hb_001488_410 Hb_004102_140--Hb_001488_410 Hb_001617_060 Hb_001617_060 Hb_004102_140--Hb_001617_060 Hb_003362_070 Hb_003362_070 Hb_004102_140--Hb_003362_070 Hb_000820_170 Hb_000820_170 Hb_004102_140--Hb_000820_170 Hb_004096_100 Hb_004096_100 Hb_004102_140--Hb_004096_100 Hb_003966_030--Hb_003362_070 Hb_003966_030--Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_003966_030--Hb_000613_080 Hb_003044_020 Hb_003044_020 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_003464_020 Hb_003464_020 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_001617_060--Hb_003362_070 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_003362_070--Hb_004935_030 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003362_070--Hb_003044_020 Hb_000820_170--Hb_006252_040 Hb_003428_070 Hb_003428_070 Hb_000820_170--Hb_003428_070 Hb_000820_170--Hb_016898_010 Hb_005731_030 Hb_005731_030 Hb_000820_170--Hb_005731_030 Hb_000101_240 Hb_000101_240 Hb_000820_170--Hb_000101_240 Hb_123352_020 Hb_123352_020 Hb_000820_170--Hb_123352_020 Hb_004096_100--Hb_003966_030 Hb_004096_100--Hb_001488_410 Hb_010381_060 Hb_010381_060 Hb_004096_100--Hb_010381_060 Hb_004096_100--Hb_003428_070 Hb_174821_010 Hb_174821_010 Hb_004096_100--Hb_174821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.83 7.66813 6.33198 8.6371 13.4887 19.7144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.46552 6.59501 9.85659 9.24649 7.11073

CAGE analysis