Hb_004102_170

Information

Type -
Description -
Location Contig4102: 102799-113258
Sequence    

Annotation

kegg
ID vvi:100253140
description uncharacterized LOC100253140
nr
ID XP_012073230.1
description PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
swissprot
ID Q4VA72
description Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis GN=brcc3 PE=2 SV=1
trembl
ID A0A067KZ48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40542: 105593-106107 , PASA_asmbl_40543: 103680-103946 , PASA_asmbl_40544: 104359-104575 , PASA_asmbl_40545: 106468-106689 , PASA_asmbl_40546: 103129-111528 , PASA_asmbl_40547: 111649-113252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_170 0.0 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
2 Hb_000787_160 0.0567447938 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
3 Hb_000049_020 0.0611180699 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
4 Hb_000146_040 0.0635667146 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
5 Hb_000345_160 0.0639483386 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
6 Hb_001405_210 0.0646268997 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
7 Hb_005797_010 0.0693731173 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
8 Hb_007481_010 0.0750339817 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
9 Hb_159809_030 0.0757310126 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
10 Hb_000256_150 0.0757392709 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
11 Hb_007286_020 0.0759863142 - - hypothetical protein L484_010675 [Morus notabilis]
12 Hb_000300_270 0.0764366856 - - cationic amino acid transporter, putative [Ricinus communis]
13 Hb_000140_350 0.0782046834 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001856_180 0.0784457367 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
15 Hb_001440_020 0.0785711437 - - exocyst componenet sec8, putative [Ricinus communis]
16 Hb_000046_570 0.0802115046 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
17 Hb_009569_040 0.0806623702 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
18 Hb_004705_170 0.0806722102 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
19 Hb_002728_080 0.0811405277 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_008511_020 0.0819598178 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]

Gene co-expression network

sample Hb_004102_170 Hb_004102_170 Hb_000787_160 Hb_000787_160 Hb_004102_170--Hb_000787_160 Hb_000049_020 Hb_000049_020 Hb_004102_170--Hb_000049_020 Hb_000146_040 Hb_000146_040 Hb_004102_170--Hb_000146_040 Hb_000345_160 Hb_000345_160 Hb_004102_170--Hb_000345_160 Hb_001405_210 Hb_001405_210 Hb_004102_170--Hb_001405_210 Hb_005797_010 Hb_005797_010 Hb_004102_170--Hb_005797_010 Hb_000787_160--Hb_000345_160 Hb_005015_060 Hb_005015_060 Hb_000787_160--Hb_005015_060 Hb_000322_080 Hb_000322_080 Hb_000787_160--Hb_000322_080 Hb_004705_170 Hb_004705_170 Hb_000787_160--Hb_004705_170 Hb_001662_100 Hb_001662_100 Hb_000787_160--Hb_001662_100 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000049_020--Hb_000345_160 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_000140_350 Hb_000140_350 Hb_000146_040--Hb_000140_350 Hb_033286_010 Hb_033286_010 Hb_000146_040--Hb_033286_010 Hb_000477_100 Hb_000477_100 Hb_000146_040--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000146_040--Hb_007481_010 Hb_000146_040--Hb_005797_010 Hb_004037_020 Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_007248_030 Hb_007248_030 Hb_001405_210--Hb_007248_030 Hb_000046_570 Hb_000046_570 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001856_180 Hb_001856_180 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_004586_060 Hb_004586_060 Hb_001405_210--Hb_004586_060 Hb_005797_010--Hb_007481_010 Hb_002728_080 Hb_002728_080 Hb_005797_010--Hb_002728_080 Hb_000139_530 Hb_000139_530 Hb_005797_010--Hb_000139_530 Hb_023313_030 Hb_023313_030 Hb_005797_010--Hb_023313_030 Hb_000009_400 Hb_000009_400 Hb_005797_010--Hb_000009_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.77576 7.75161 8.16131 16.7626 6.77974 9.41366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64469 5.73461 5.40917 8.44672 8.29059

CAGE analysis