Hb_004102_190

Information

Type -
Description -
Location Contig4102: 121223-123644
Sequence    

Annotation

kegg
ID cic:CICLE_v10026275mg
description hypothetical protein
nr
ID XP_011040023.1
description PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067KLU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06178 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40549: 121308-123692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_190 0.0 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
2 Hb_000389_060 0.0803036099 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
3 Hb_001486_260 0.0873195357 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
4 Hb_001019_090 0.0900360647 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
5 Hb_001279_070 0.0972572845 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
6 Hb_000316_110 0.0983050809 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
7 Hb_000189_530 0.0984774547 - - 40S ribosomal protein S24B [Hevea brasiliensis]
8 Hb_007166_050 0.1006101021 - - -
9 Hb_000152_430 0.1023121174 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
10 Hb_008016_010 0.107418649 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
11 Hb_004117_290 0.1080242302 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000365_380 0.1088704678 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000723_090 0.109463885 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001104_120 0.109912263 - - -
15 Hb_011161_040 0.1132612617 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
16 Hb_000483_160 0.1144485833 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
17 Hb_002477_240 0.1145456612 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
18 Hb_005611_010 0.117044916 - - PREDICTED: protein prune homolog [Jatropha curcas]
19 Hb_000617_320 0.1179843851 - - 40S ribosomal protein S21B [Hevea brasiliensis]
20 Hb_004297_100 0.118306667 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]

Gene co-expression network

sample Hb_004102_190 Hb_004102_190 Hb_000389_060 Hb_000389_060 Hb_004102_190--Hb_000389_060 Hb_001486_260 Hb_001486_260 Hb_004102_190--Hb_001486_260 Hb_001019_090 Hb_001019_090 Hb_004102_190--Hb_001019_090 Hb_001279_070 Hb_001279_070 Hb_004102_190--Hb_001279_070 Hb_000316_110 Hb_000316_110 Hb_004102_190--Hb_000316_110 Hb_000189_530 Hb_000189_530 Hb_004102_190--Hb_000189_530 Hb_000389_060--Hb_001486_260 Hb_002875_080 Hb_002875_080 Hb_000389_060--Hb_002875_080 Hb_001104_120 Hb_001104_120 Hb_000389_060--Hb_001104_120 Hb_092272_020 Hb_092272_020 Hb_000389_060--Hb_092272_020 Hb_000061_480 Hb_000061_480 Hb_000389_060--Hb_000061_480 Hb_000085_200 Hb_000085_200 Hb_001486_260--Hb_000085_200 Hb_000408_050 Hb_000408_050 Hb_001486_260--Hb_000408_050 Hb_001486_260--Hb_092272_020 Hb_001486_260--Hb_002875_080 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_000617_320 Hb_000617_320 Hb_001019_090--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_003874_020 Hb_003874_020 Hb_001279_070--Hb_003874_020 Hb_032202_090 Hb_032202_090 Hb_001279_070--Hb_032202_090 Hb_009767_120 Hb_009767_120 Hb_001279_070--Hb_009767_120 Hb_000365_380 Hb_000365_380 Hb_001279_070--Hb_000365_380 Hb_002893_060 Hb_002893_060 Hb_001279_070--Hb_002893_060 Hb_007432_080 Hb_007432_080 Hb_001279_070--Hb_007432_080 Hb_006569_020 Hb_006569_020 Hb_000316_110--Hb_006569_020 Hb_000316_110--Hb_007166_050 Hb_000316_110--Hb_001019_090 Hb_009711_030 Hb_009711_030 Hb_000316_110--Hb_009711_030 Hb_159558_030 Hb_159558_030 Hb_000316_110--Hb_159558_030 Hb_022250_040 Hb_022250_040 Hb_000316_110--Hb_022250_040 Hb_000189_530--Hb_001019_090 Hb_000189_530--Hb_000617_320 Hb_000366_100 Hb_000366_100 Hb_000189_530--Hb_000366_100 Hb_000189_530--Hb_000152_430 Hb_000189_530--Hb_007166_050 Hb_000193_350 Hb_000193_350 Hb_000189_530--Hb_000193_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3159 1.45661 1.81763 8.33856 17.3305 19.5675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2925 26.8011 9.4428 3.84294 1.2854

CAGE analysis