Hb_004102_200

Information

Type -
Description -
Location Contig4102: 131466-132857
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18980g
description POPTRDRAFT_833746; hypothetical protein
nr
ID XP_012081690.1
description PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
swissprot
ID Q66PF2
description Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1
trembl
ID A0A067K0Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18726 PE=4 SV=1
Gene Ontology
ID GO:0016758
description udp-rhamnose:rhamnosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_200 0.0 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
2 Hb_000983_130 0.0605216407 - - transcription factor, putative [Ricinus communis]
3 Hb_029238_040 0.071554124 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
4 Hb_004450_090 0.0844256756 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
5 Hb_152277_010 0.090816488 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
6 Hb_061783_010 0.0945394318 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
7 Hb_156850_050 0.102015855 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
8 Hb_000000_260 0.1043515976 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
9 Hb_007579_030 0.1044230175 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_002960_030 0.1129874875 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
11 Hb_080601_010 0.1182072279 - - metallothionein 3-like protein [Hevea brasiliensis]
12 Hb_001366_300 0.1200932361 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
13 Hb_002534_070 0.1210262258 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
14 Hb_158189_010 0.122953955 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
15 Hb_001680_050 0.125481612 - - -
16 Hb_000984_110 0.1262799174 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
17 Hb_000258_230 0.1268342304 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002170_010 0.1284493034 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
19 Hb_001401_120 0.1321279414 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
20 Hb_000201_010 0.1326859439 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_004102_200 Hb_004102_200 Hb_000983_130 Hb_000983_130 Hb_004102_200--Hb_000983_130 Hb_029238_040 Hb_029238_040 Hb_004102_200--Hb_029238_040 Hb_004450_090 Hb_004450_090 Hb_004102_200--Hb_004450_090 Hb_152277_010 Hb_152277_010 Hb_004102_200--Hb_152277_010 Hb_061783_010 Hb_061783_010 Hb_004102_200--Hb_061783_010 Hb_156850_050 Hb_156850_050 Hb_004102_200--Hb_156850_050 Hb_000983_130--Hb_004450_090 Hb_000983_130--Hb_029238_040 Hb_002960_030 Hb_002960_030 Hb_000983_130--Hb_002960_030 Hb_000983_130--Hb_152277_010 Hb_000000_260 Hb_000000_260 Hb_000983_130--Hb_000000_260 Hb_029238_040--Hb_156850_050 Hb_001401_120 Hb_001401_120 Hb_029238_040--Hb_001401_120 Hb_007579_030 Hb_007579_030 Hb_029238_040--Hb_007579_030 Hb_029238_040--Hb_004450_090 Hb_002534_070 Hb_002534_070 Hb_004450_090--Hb_002534_070 Hb_004450_090--Hb_061783_010 Hb_004450_090--Hb_000000_260 Hb_000258_230 Hb_000258_230 Hb_152277_010--Hb_000258_230 Hb_005790_010 Hb_005790_010 Hb_152277_010--Hb_005790_010 Hb_007103_020 Hb_007103_020 Hb_152277_010--Hb_007103_020 Hb_009771_040 Hb_009771_040 Hb_152277_010--Hb_009771_040 Hb_061783_010--Hb_029238_040 Hb_007545_220 Hb_007545_220 Hb_061783_010--Hb_007545_220 Hb_061783_010--Hb_156850_050 Hb_000984_110 Hb_000984_110 Hb_061783_010--Hb_000984_110 Hb_156850_050--Hb_007579_030 Hb_156850_050--Hb_001401_120 Hb_000096_050 Hb_000096_050 Hb_156850_050--Hb_000096_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.4499 3.45213 24.3044 0.0579135 0.0455127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0340516 0.0267881 0 0.0963387 12.0655

CAGE analysis