Hb_004106_010

Information

Type -
Description -
Location Contig4106: 4171-5475
Sequence    

Annotation

kegg
ID rcu:RCOM_1313630
description lung seven transmembrane receptor, putative
nr
ID XP_012086617.1
description PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
swissprot
ID Q8BUV8
description Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2
trembl
ID A0A067JMY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20368 PE=4 SV=1
Gene Ontology
ID GO:0005768
description protein gpr107-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40553: 3834-5853
cDNA
(Sanger)
(ID:Location)		 049_C04.ab1: 5158-5806

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004106_010 0.0 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
2 Hb_001662_170 0.0803762338 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
3 Hb_093177_010 0.0814381083 - - Phosphoprotein phosphatase [Theobroma cacao]
4 Hb_158696_010 0.0835815629 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
5 Hb_012787_040 0.099031082 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
6 Hb_001053_200 0.1138925399 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
7 Hb_008103_100 0.1184499398 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
8 Hb_003752_120 0.1214124055 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
9 Hb_011360_090 0.1286008836 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_003216_050 0.1298883296 - - PREDICTED: OBERON-like protein [Jatropha curcas]
11 Hb_001951_240 0.1338535301 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
12 Hb_000803_060 0.1390485733 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
13 Hb_098160_010 0.1392024188 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
14 Hb_005000_050 0.1407909059 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
15 Hb_004032_310 0.1418542108 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
16 Hb_000172_080 0.1443325553 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
17 Hb_033642_070 0.1470513534 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
18 Hb_005568_130 0.1476245745 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
19 Hb_001608_030 0.1482088654 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
20 Hb_002849_110 0.1496940841 - - hypothetical protein JCGZ_14362 [Jatropha curcas]

Gene co-expression network

sample Hb_004106_010 Hb_004106_010 Hb_001662_170 Hb_001662_170 Hb_004106_010--Hb_001662_170 Hb_093177_010 Hb_093177_010 Hb_004106_010--Hb_093177_010 Hb_158696_010 Hb_158696_010 Hb_004106_010--Hb_158696_010 Hb_012787_040 Hb_012787_040 Hb_004106_010--Hb_012787_040 Hb_001053_200 Hb_001053_200 Hb_004106_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_004106_010--Hb_008103_100 Hb_001662_170--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_001662_170--Hb_004032_310 Hb_001662_170--Hb_001053_200 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_093177_010--Hb_158696_010 Hb_001608_030 Hb_001608_030 Hb_093177_010--Hb_001608_030 Hb_007137_030 Hb_007137_030 Hb_093177_010--Hb_007137_030 Hb_115158_010 Hb_115158_010 Hb_093177_010--Hb_115158_010 Hb_093177_010--Hb_001662_170 Hb_158696_010--Hb_012787_040 Hb_158696_010--Hb_001662_170 Hb_158696_010--Hb_003752_120 Hb_004631_110 Hb_004631_110 Hb_158696_010--Hb_004631_110 Hb_012787_040--Hb_003752_120 Hb_000803_060 Hb_000803_060 Hb_012787_040--Hb_000803_060 Hb_012787_040--Hb_011360_090 Hb_001053_200--Hb_008103_100 Hb_001951_240 Hb_001951_240 Hb_001053_200--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_001053_200--Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_001053_200--Hb_005496_160 Hb_001053_200--Hb_004032_310 Hb_008103_100--Hb_001662_170 Hb_008103_100--Hb_012787_040 Hb_003216_050 Hb_003216_050 Hb_008103_100--Hb_003216_050 Hb_008103_100--Hb_000803_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0023 223.154 52.8686 84.8614 25.6954 15.229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.14157 2.97573 7.06918 33.5477 41.2587

CAGE analysis