Hb_004108_020

Information

Type -
Description -
Location Contig4108: 3816-11317
Sequence    

Annotation

kegg
ID cic:CICLE_v10020955mg
description hypothetical protein
nr
ID XP_011033674.1
description PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID I1JFD0
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0004842
description mitochondrial ubiquitin ligase activator of nfkb 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_020 0.0 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Populus euphratica]
2 Hb_000172_120 0.0962100814 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
3 Hb_005288_160 0.1018608296 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
4 Hb_007441_340 0.1020259869 - - protein with unknown function [Ricinus communis]
5 Hb_004096_170 0.1034216971 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
6 Hb_023226_060 0.104610044 - - unnamed protein product [Vitis vinifera]
7 Hb_003453_020 0.1056798815 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
8 Hb_003656_130 0.107616064 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
9 Hb_000176_110 0.1081893902 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
10 Hb_000012_090 0.1084513021 - - 3'-5' exonuclease, putative [Ricinus communis]
11 Hb_006922_080 0.1091271571 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
12 Hb_001741_140 0.1116673106 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
13 Hb_002400_220 0.1138447644 - - Vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_005735_030 0.1156605245 - - conserved hypothetical protein [Ricinus communis]
15 Hb_143629_010 0.1165790988 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_003352_050 0.1169976764 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
17 Hb_005215_080 0.1171771491 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
18 Hb_004447_030 0.1203707068 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
19 Hb_010120_030 0.121047119 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
20 Hb_002014_080 0.1213100867 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_004108_020 Hb_004108_020 Hb_000172_120 Hb_000172_120 Hb_004108_020--Hb_000172_120 Hb_005288_160 Hb_005288_160 Hb_004108_020--Hb_005288_160 Hb_007441_340 Hb_007441_340 Hb_004108_020--Hb_007441_340 Hb_004096_170 Hb_004096_170 Hb_004108_020--Hb_004096_170 Hb_023226_060 Hb_023226_060 Hb_004108_020--Hb_023226_060 Hb_003453_020 Hb_003453_020 Hb_004108_020--Hb_003453_020 Hb_000172_120--Hb_007441_340 Hb_000172_120--Hb_004096_170 Hb_000172_120--Hb_003453_020 Hb_001269_150 Hb_001269_150 Hb_000172_120--Hb_001269_150 Hb_002400_220 Hb_002400_220 Hb_000172_120--Hb_002400_220 Hb_002377_040 Hb_002377_040 Hb_000172_120--Hb_002377_040 Hb_000733_060 Hb_000733_060 Hb_005288_160--Hb_000733_060 Hb_003605_070 Hb_003605_070 Hb_005288_160--Hb_003605_070 Hb_005288_160--Hb_023226_060 Hb_128548_020 Hb_128548_020 Hb_005288_160--Hb_128548_020 Hb_002631_050 Hb_002631_050 Hb_005288_160--Hb_002631_050 Hb_005288_160--Hb_003453_020 Hb_007441_340--Hb_004096_170 Hb_007441_340--Hb_003453_020 Hb_007441_340--Hb_002400_220 Hb_007441_340--Hb_001269_150 Hb_000258_410 Hb_000258_410 Hb_007441_340--Hb_000258_410 Hb_000847_070 Hb_000847_070 Hb_004096_170--Hb_000847_070 Hb_004096_170--Hb_003453_020 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_023226_060--Hb_000733_060 Hb_000175_490 Hb_000175_490 Hb_023226_060--Hb_000175_490 Hb_000768_030 Hb_000768_030 Hb_023226_060--Hb_000768_030 Hb_022256_040 Hb_022256_040 Hb_023226_060--Hb_022256_040 Hb_011644_020 Hb_011644_020 Hb_023226_060--Hb_011644_020 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.40812 0.52549 0.652048 1.31038 4.14188 3.35536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63863 1.93669 1.51516 1.11603 0.0934868

CAGE analysis