Hb_004108_050

Information

Type -
Description -
Location Contig4108: 13697-18251
Sequence    

Annotation

kegg
ID rcu:RCOM_0648170
description elongation factor tu, putative (EC:2.7.7.4)
nr
ID XP_012092299.1
description PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZT91
description Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1
trembl
ID A0A067JNB1
description Elongation factor Tu OS=Jatropha curcas GN=JCGZ_21976 PE=3 SV=1
Gene Ontology
ID GO:0003746
description elongation factor mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40556: 14531-18217 , PASA_asmbl_40557: 15668-18217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_050 0.0 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
2 Hb_005357_150 0.0695769808 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000085_310 0.0807571496 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
4 Hb_026988_020 0.0836591837 - - outward rectifying K+ channel [Hevea brasiliensis]
5 Hb_027472_180 0.0853071165 - - hypothetical protein L484_016229 [Morus notabilis]
6 Hb_023386_080 0.0864420678 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
7 Hb_003151_050 0.0879890729 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
8 Hb_000956_010 0.088990301 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
9 Hb_010638_020 0.0894350951 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
10 Hb_000091_090 0.0909976358 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
11 Hb_001981_090 0.0913308765 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
12 Hb_000186_240 0.0917159055 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
13 Hb_002603_100 0.0931723409 - - ATATH9, putative [Ricinus communis]
14 Hb_000983_100 0.0939036386 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
15 Hb_007152_020 0.0945909006 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
16 Hb_000376_050 0.0946063624 - - polyadenylate-binding protein, putative [Ricinus communis]
17 Hb_022216_020 0.0962432154 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_003408_030 0.0968774709 - - PREDICTED: protein YIF1B [Jatropha curcas]
19 Hb_021068_050 0.0976344691 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
20 Hb_003018_200 0.0988686178 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004108_050 Hb_004108_050 Hb_005357_150 Hb_005357_150 Hb_004108_050--Hb_005357_150 Hb_000085_310 Hb_000085_310 Hb_004108_050--Hb_000085_310 Hb_026988_020 Hb_026988_020 Hb_004108_050--Hb_026988_020 Hb_027472_180 Hb_027472_180 Hb_004108_050--Hb_027472_180 Hb_023386_080 Hb_023386_080 Hb_004108_050--Hb_023386_080 Hb_003151_050 Hb_003151_050 Hb_004108_050--Hb_003151_050 Hb_001981_090 Hb_001981_090 Hb_005357_150--Hb_001981_090 Hb_003057_120 Hb_003057_120 Hb_005357_150--Hb_003057_120 Hb_005357_150--Hb_003151_050 Hb_003408_030 Hb_003408_030 Hb_005357_150--Hb_003408_030 Hb_004800_160 Hb_004800_160 Hb_005357_150--Hb_004800_160 Hb_001366_220 Hb_001366_220 Hb_000085_310--Hb_001366_220 Hb_000809_040 Hb_000809_040 Hb_000085_310--Hb_000809_040 Hb_001366_230 Hb_001366_230 Hb_000085_310--Hb_001366_230 Hb_002662_100 Hb_002662_100 Hb_000085_310--Hb_002662_100 Hb_000085_310--Hb_005357_150 Hb_000983_100 Hb_000983_100 Hb_026988_020--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_026988_020--Hb_000956_010 Hb_026988_020--Hb_001366_230 Hb_000861_040 Hb_000861_040 Hb_026988_020--Hb_000861_040 Hb_001677_110 Hb_001677_110 Hb_026988_020--Hb_001677_110 Hb_002097_110 Hb_002097_110 Hb_027472_180--Hb_002097_110 Hb_000703_140 Hb_000703_140 Hb_027472_180--Hb_000703_140 Hb_000376_050 Hb_000376_050 Hb_027472_180--Hb_000376_050 Hb_004662_030 Hb_004662_030 Hb_027472_180--Hb_004662_030 Hb_007101_130 Hb_007101_130 Hb_027472_180--Hb_007101_130 Hb_007426_230 Hb_007426_230 Hb_027472_180--Hb_007426_230 Hb_002603_100 Hb_002603_100 Hb_023386_080--Hb_002603_100 Hb_000329_040 Hb_000329_040 Hb_023386_080--Hb_000329_040 Hb_000634_100 Hb_000634_100 Hb_023386_080--Hb_000634_100 Hb_044662_070 Hb_044662_070 Hb_023386_080--Hb_044662_070 Hb_023386_080--Hb_000956_010 Hb_023386_080--Hb_000376_050 Hb_000091_090 Hb_000091_090 Hb_003151_050--Hb_000091_090 Hb_003151_050--Hb_023386_080 Hb_021650_030 Hb_021650_030 Hb_003151_050--Hb_021650_030 Hb_000429_170 Hb_000429_170 Hb_003151_050--Hb_000429_170 Hb_000665_040 Hb_000665_040 Hb_003151_050--Hb_000665_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.1979 10.8502 10.7258 9.30333 55.5382 37.8642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.9119 55.468 70.3906 22.4203 4.65636

CAGE analysis