Hb_004108_060

Information

Type -
Description -
Location Contig4108: 18923-23739
Sequence    

Annotation

kegg
ID rcu:RCOM_0648280
description hypothetical protein
nr
ID KDP21504.1
description hypothetical protein JCGZ_21975 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21975 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40558: 18879-23684 , PASA_asmbl_40559: 19607-21636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_060 0.0 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
2 Hb_002660_190 0.0879249677 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
3 Hb_001472_160 0.0974577944 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
4 Hb_002282_070 0.1024286557 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
5 Hb_000529_180 0.1059389764 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
6 Hb_001377_040 0.1067052189 - - chitinase, putative [Ricinus communis]
7 Hb_001427_040 0.1074499392 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
8 Hb_013749_050 0.107621922 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
9 Hb_155832_010 0.1128416955 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_000220_210 0.1132338287 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
11 Hb_000144_060 0.119436875 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_002542_160 0.1219067433 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
13 Hb_000345_370 0.1220097908 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
14 Hb_022378_010 0.1228063989 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]
15 Hb_143629_140 0.1232624315 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_000282_080 0.1234701889 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000032_500 0.124094776 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
18 Hb_000349_240 0.1242860121 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
19 Hb_003038_160 0.1247237867 - - auxilin, putative [Ricinus communis]
20 Hb_003777_020 0.1247280066 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]

Gene co-expression network

sample Hb_004108_060 Hb_004108_060 Hb_002660_190 Hb_002660_190 Hb_004108_060--Hb_002660_190 Hb_001472_160 Hb_001472_160 Hb_004108_060--Hb_001472_160 Hb_002282_070 Hb_002282_070 Hb_004108_060--Hb_002282_070 Hb_000529_180 Hb_000529_180 Hb_004108_060--Hb_000529_180 Hb_001377_040 Hb_001377_040 Hb_004108_060--Hb_001377_040 Hb_001427_040 Hb_001427_040 Hb_004108_060--Hb_001427_040 Hb_002660_190--Hb_001427_040 Hb_002660_190--Hb_002282_070 Hb_011861_050 Hb_011861_050 Hb_002660_190--Hb_011861_050 Hb_000345_370 Hb_000345_370 Hb_002660_190--Hb_000345_370 Hb_003475_020 Hb_003475_020 Hb_002660_190--Hb_003475_020 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_004884_180 Hb_004884_180 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_002282_070--Hb_001427_040 Hb_016461_030 Hb_016461_030 Hb_002282_070--Hb_016461_030 Hb_002282_070--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_002282_070--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060 Hb_002675_250 Hb_002675_250 Hb_000529_180--Hb_002675_250 Hb_010863_050 Hb_010863_050 Hb_000529_180--Hb_010863_050 Hb_008705_020 Hb_008705_020 Hb_000529_180--Hb_008705_020 Hb_000167_110 Hb_000167_110 Hb_000529_180--Hb_000167_110 Hb_001438_010 Hb_001438_010 Hb_000529_180--Hb_001438_010 Hb_000046_540 Hb_000046_540 Hb_000529_180--Hb_000046_540 Hb_000802_130 Hb_000802_130 Hb_001377_040--Hb_000802_130 Hb_001377_040--Hb_001472_160 Hb_001660_120 Hb_001660_120 Hb_001377_040--Hb_001660_120 Hb_000559_020 Hb_000559_020 Hb_001377_040--Hb_000559_020 Hb_000331_130 Hb_000331_130 Hb_001377_040--Hb_000331_130 Hb_002411_190 Hb_002411_190 Hb_001377_040--Hb_002411_190 Hb_001427_040--Hb_000220_210 Hb_001427_040--Hb_016461_030 Hb_002542_160 Hb_002542_160 Hb_001427_040--Hb_002542_160 Hb_001427_040--Hb_000345_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7592 42.6336 56.1398 23.4613 23.9593 20.8556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.781 20.2575 28.3551 33.5289 124.576

CAGE analysis