Hb_004108_070

Information

Type -
Description -
Location Contig4108: 25714-34245
Sequence    

Annotation

kegg
ID vvi:100258076
description BTB/POZ and MATH domain-containing protein 2-like
nr
ID XP_012092297.1
description PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
swissprot
ID Q9M8J9
description BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1
trembl
ID A0A067JFD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21974 PE=4 SV=1
Gene Ontology
ID GO:0005515
description btb poz and math domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40562: 25738-30182 , PASA_asmbl_40563: 25738-28476 , PASA_asmbl_40564: 31210-34025 , PASA_asmbl_40565: 30729-34284 , PASA_asmbl_40566: 31402-32031
cDNA
(Sanger)
(ID:Location)		 001_H10.ab1: 30879-34221 , 024_A17.ab1: 30875-34183 , 047_L07.ab1: 30879-34221 , 053_M02.ab1: 30875-34183

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_070 0.0 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
2 Hb_005731_050 0.0575990916 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
3 Hb_006693_020 0.0680139657 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
4 Hb_000317_390 0.0690801266 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
5 Hb_000815_320 0.0690931956 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
6 Hb_012286_030 0.0709614033 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
7 Hb_002375_070 0.0714726441 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000331_200 0.0717415673 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
9 Hb_000005_090 0.072248349 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
10 Hb_004109_170 0.0729308212 - - PREDICTED: probable ribokinase [Jatropha curcas]
11 Hb_002343_060 0.0735307817 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
12 Hb_004899_370 0.0753286943 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
13 Hb_005496_140 0.0759275999 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006059_050 0.0760345305 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
15 Hb_000390_300 0.076524089 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
16 Hb_001140_370 0.0774508252 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
17 Hb_000580_090 0.077943061 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
18 Hb_024439_010 0.0779579421 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
19 Hb_000527_060 0.0780140597 - - Protein C20orf11, putative [Ricinus communis]
20 Hb_000001_060 0.0780744557 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004108_070 Hb_004108_070 Hb_005731_050 Hb_005731_050 Hb_004108_070--Hb_005731_050 Hb_006693_020 Hb_006693_020 Hb_004108_070--Hb_006693_020 Hb_000317_390 Hb_000317_390 Hb_004108_070--Hb_000317_390 Hb_000815_320 Hb_000815_320 Hb_004108_070--Hb_000815_320 Hb_012286_030 Hb_012286_030 Hb_004108_070--Hb_012286_030 Hb_002375_070 Hb_002375_070 Hb_004108_070--Hb_002375_070 Hb_000960_060 Hb_000960_060 Hb_005731_050--Hb_000960_060 Hb_000111_380 Hb_000111_380 Hb_005731_050--Hb_000111_380 Hb_002863_050 Hb_002863_050 Hb_005731_050--Hb_002863_050 Hb_033594_120 Hb_033594_120 Hb_005731_050--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_005731_050--Hb_003428_030 Hb_000390_300 Hb_000390_300 Hb_006693_020--Hb_000390_300 Hb_000431_170 Hb_000431_170 Hb_006693_020--Hb_000431_170 Hb_000331_200 Hb_000331_200 Hb_006693_020--Hb_000331_200 Hb_000465_390 Hb_000465_390 Hb_006693_020--Hb_000465_390 Hb_006693_020--Hb_000317_390 Hb_152784_010 Hb_152784_010 Hb_000317_390--Hb_152784_010 Hb_000317_390--Hb_000331_200 Hb_001318_250 Hb_001318_250 Hb_000317_390--Hb_001318_250 Hb_000045_310 Hb_000045_310 Hb_000317_390--Hb_000045_310 Hb_001821_010 Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_000527_060 Hb_000527_060 Hb_012286_030--Hb_000527_060 Hb_012286_030--Hb_000580_090 Hb_004109_170 Hb_004109_170 Hb_012286_030--Hb_004109_170 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040 Hb_003671_020 Hb_003671_020 Hb_002375_070--Hb_003671_020 Hb_011344_210 Hb_011344_210 Hb_002375_070--Hb_011344_210 Hb_000692_220 Hb_000692_220 Hb_002375_070--Hb_000692_220 Hb_002375_070--Hb_000331_200 Hb_092337_010 Hb_092337_010 Hb_002375_070--Hb_092337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.7921 19.2792 31.0715 39.5301 32.174 35.8172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2636 65.725 38.0595 18.8839 24.1617

CAGE analysis